Evidence map›Paper›PMID 30976796›Full record

ArticleNucleic acids research2019

Structural insights into the modulatory role of the accessory protein WYL1 in the Type VI-D CRISPR-Cas system.

Heng Zhang, Cheng Dong, Li Li, Gregory A Wasney, Jinrong Min

Abstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Insights Gained from RNA Editing Targeted by the CRISPR-Cas13 Family.International journal of molecular sciences · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. ssDNA is an allosteric regulator of theGenes & development · 2022
    Article
  15. Cas13d: A New Molecular Scissor for Transcriptome Engineering.Frontiers in cell and developmental biology · 2022
    Review
  16. Article
  17. Functional Features and Current Applications of the RNA-Targeting Type VI CRISPR-Cas Systems.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021
    Review
  18. Review
  19. Controlling and enhancing CRISPR systems.Nature chemical biology · 2021
    Review
  20. A Sensitive, Rapid, and Portable CasRx-based Diagnostic Assay for SARS-CoV-2.medRxiv : the preprint server for health sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Heng ZhangStructural Genomics Consortium, University of Toronto, Toronto, ON M5G 1L7, Canada.
Cheng DongStructural Genomics Consortium, University of Toronto, Toronto, ON M5G 1L7, Canada.
Li LiStructural Genomics Consortium, University of Toronto, Toronto, ON M5G 1L7, Canada.
Gregory A WasneyThe Hospital for Sick Children, Toronto, ON M5G 0A4, Canada.
Jinrong MinStructural Genomics Consortium, University of Toronto, Toronto, ON M5G 1L7, Canada.

Funding

Wellcome Trust
6 · The paper itself

Abstract

The Type VI-D CRISPR-Cas system employs an RNA-guided RNase Cas13d with minimal targeting constraints to combat viral infections. This CRISPR system contains RspWYL1 as a unique accessory protein that plays a key role in boosting its effector function on target RNAs, but the mechanism behind this RspWYL1-mediated stimulation remains completely unexplored. Through structural and biophysical approaches, we reveal that the full-length RspWYL1 possesses a novel three-domain architecture and preferentially binds ssRNA with high affinity. Specifically, the N-terminus of RspWYL1 harbors a ribbon-helix-helix motif reminiscent of transcriptional regulators; the central WYL domain of RspWYL1 displays a Sm-like β-barrel fold; and the C-terminal domain of RspWYL1 primarily contributes to the dimerization of RspWYL1 and may regulate the RspWYL1 function via a large conformational change. Collectively, this study provides a first glimpse into the complex mechanism behind the RspWYL1-dictated boosting of target ssRNA cleavage in the Type VI-D CRISPR-Cas system.

Indexed as

CRISPR-Cas SystemsBacterial ProteinsCRISPR-Associated ProteinsCrystallography, X-RayGene EditingProtein DomainsProtein Structure, SecondaryRNARNA, BacterialRNA, Guide, CRISPR-Cas SystemsRuminococcusBacterial ProteinsCRISPR-Associated ProteinsRNARNA, BacterialRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID30976796
PMCPMC6547453

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.