Evidence map›Paper›PMID 30976086›Full record

ArticleMolecular psychiatry2021

Sex-differential DNA methylation and associated regulation networks in human brain implicated in the sex-biased risks of psychiatric disorders.

Yan Xia, Rujia Dai, Kangli Wang, Chuan Jiao, Chunling Zhang, Yuchen Xu, Honglei Li, Xi Jing, Yu Chen, Yi Jiang and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular psychiatry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed, 5 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 5 syntheses or guidelines pooled it, 96 citations in OpenAlex.

  1. Pooled it
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  15. The Role of Long Non-Coding RNA in Anxiety Disorders: A Literature Review.International journal of molecular sciences · 2025
    Review
  16. Effects of positive mGlu5 modulation on DJournal of psychopharmacology (Oxford, England) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Yan XiaCenter for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China.ORCID http://orcid.org/0000-0001-6432-9911
Rujia DaiCenter for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China.
Kangli WangCenter for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China.
Chuan JiaoDepartment of Psychiatry, State University of New York Upstate Medical University, Syracuse, NY, USA.
Chunling ZhangDepartment of Neuroscience, State University of New York Upstate Medical University, Syracuse, NY, USA.
Yuchen XuXiangya School of Medicine, Central South University, Changsha, Hunan, China.
Honglei LiXiangya School of Medicine, Central South University, Changsha, Hunan, China.
Xi JingXiangya School of Medicine, Central South University, Changsha, Hunan, China.
Yu ChenCenter for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China.
Yi JiangCenter for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China.
Richard F KoppDepartment of Psychiatry, State University of New York Upstate Medical University, Syracuse, NY, USA.
Gina GiaseDepartment of Public Health, University of Illinois at Chicago, Chicago, IL, USA.
Chao ChenCenter for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China. chenchao@sklmg.edu.cn.
Chunyu LiuCenter for Medical Genetics, School of Life Sciences, Central South University, Changsha, Hunan, China. liuch@upstate.edu.ORCID http://orcid.org/0000-0002-5986-4415
Central South University · CNSUNY Upstate Medical University · USUniversity of Illinois Chicago · US

Funding

2/2-Discovery and validation of neuronal enhancers associated with the development of psychiatric disordersU01MH116489 · NIMH · UNIVERSITY OF CHICAGO · PI GAYNOR, SOPHIA, GESCHWIND, DANIEL H · 2018 to 2022
$4.5M
Genetic variants affect brain gene expression and risks of psychiatric disordersU01MH103340 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI LIU, CHUNYU, RZHETSKY, ANDREY · 2014 to 2017
$4.3M
1/2 Measuring translational dynamics and the proteome to identify potential brain biomarkers for psychiatric diseaseR01MH110920 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI LIU, CHUNYU · 2016 to 2019
$2.0M
Integrating epigenomic maps to predict regulatory functions of genetic variantsR01ES024988 · NIEHS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LIU, CHUNYU · 2014 to 2015
$625k
1/3 High-resolution mapping of cell type-specific DNA (hydroxy)methylation in the human brain during postnatal development and in psychiatric disease.U01MH122591 · NIMH · UPSTATE MEDICAL UNIVERSITY · PI LIU, CHUNYU · 2020 to 2022
$483k
NIEHS NIH HHS R01 ES024988NIMH NIH HHS R01 MH103340NIMH NIH HHS R01 MH110920NIMH NIH HHS U01 MH103340NIMH NIH HHS U01 MH116489NIMH NIH HHS U01 MH122591
6 · The paper itself

Abstract

Many psychiatric disorders are characterized by a strong sex difference, but the mechanisms behind sex-bias are not fully understood. DNA methylation plays important roles in regulating gene expression, ultimately impacting sexually different characteristics of the human brain. Most previous literature focused on DNA methylation alone without considering the regulatory network and its contribution to sex-bias of psychiatric disorders. Since DNA methylation acts in a complex regulatory network to connect genetic and environmental factors with high-order brain functions, we investigated the regulatory networks associated with different DNA methylation and assessed their contribution to the risks of psychiatric disorders. We compiled data from 1408 postmortem brain samples in 3 collections to identify sex-differentially methylated positions (DMPs) and regions (DMRs). We identified and replicated thousands of DMPs and DMRs. The DMR genes were enriched in neuronal related pathways. We extended the regulatory networks related to sex-differential methylation and psychiatric disorders by integrating methylation quantitative trait loci (meQTLs), gene expression, and protein-protein interaction data. We observed significant enrichment of sex-associated genes in psychiatric disorder-associated gene sets. We prioritized 2080 genes that were sex-biased and associated with psychiatric disorders, such as NRXN1, NRXN2, NRXN3, FDE4A, and SHANK2. These genes are enriched in synapse-related pathways and signaling pathways, suggesting that sex-differential genes of these neuronal pathways may cause the sex-bias of psychiatric disorders.

Indexed as

DNA MethylationMental DisordersBrainCpG IslandsEpigenesis, GeneticFemaleHumansMaleQuantitative Trait Loci

Identifiers

PMID30976086
PMCPMC6788945
OpenAlexW2940280400

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.