Evidence map›Paper›PMID 30975750›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Structural dynamics and transient lipid binding of synaptobrevin-2 tune SNARE assembly and membrane fusion.

Nils-Alexander Lakomek, Halenur Yavuz, Reinhard Jahn, Ángel Pérez-Lara

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Mechanisms of SNARE proteins in membrane fusion.Nature reviews. Molecular cell biology · 2024
    Review
  10. Article
  11. Article
  12. SNARE Proteins in Synaptic Vesicle Fusion.Advances in neurobiology · 2023
    Article
  13. Article
  14. Article
  15. The function of VAMP2 in mediating membrane fusion: An overview.Frontiers in molecular neuroscience · 2022
    Review
  16. Review
  17. Chaperoning SNARE Folding and Assembly.Annual review of biochemistry · 2021
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Nils-Alexander LakomekLaboratory of Physical Chemistry, ETH Zurich, CH-8093 Zurich, Switzerland; nils-alexander.lakomek@phys.chem.ethz.ch rjahn@gwdg.de fperezl@gwdg.de.
Halenur YavuzDepartment of Neurobiology, Max Planck Institute for Biophysical Chemistry, 37077 Gottingen, Germany.
Reinhard JahnDepartment of Neurobiology, Max Planck Institute for Biophysical Chemistry, 37077 Gottingen, Germany nils-alexander.lakomek@phys.chem.ethz.ch rjahn@gwdg.de fperezl@gwdg.de.ORCID 0000-0003-1542-3498
Ángel Pérez-LaraDepartment of Neurobiology, Max Planck Institute for Biophysical Chemistry, 37077 Gottingen, Germany nils-alexander.lakomek@phys.chem.ethz.ch rjahn@gwdg.de fperezl@gwdg.de.ORCID 0000-0002-2736-3501
Max Planck Institute for Biophysical Chemistry · DEETH Zurich · CH

Funding

Structural Dynamics of the Exocytotic Fusion Machine in Neurons.P01GM072694 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI KIESSLING, VOLKER · 2005 to 2021
$17.4M
NIGMS NIH HHS P01 GM072694
6 · The paper itself

Abstract

Intrinsically disordered proteins (IDPs) and their conformational transitions play an important role in neurotransmitter release at the neuronal synapse. Here, the SNARE proteins are essential by forming the SNARE complex that drives vesicular membrane fusion. While it is widely accepted that the SNARE proteins are intrinsically disordered in their monomeric prefusion form, important mechanistic aspects of this prefusion conformation and its lipid interactions, before forming the SNARE complex, are not fully understood at the molecular level and remain controversial. Here, by a combination of NMR and fluorescence spectroscopy methods, we find that vesicular synaptobrevin-2 (syb-2) in its monomeric prefusion conformation shows high flexibility, characteristic for an IDP, but also a high dynamic range and increasing rigidity from the N to C terminus. The gradual increase in rigidity correlates with an increase in lipid binding affinity from the N to C terminus. It could also explain the increased rate for C-terminal SNARE zippering, known to be faster than N-terminal SNARE zippering. Also, the syb-2 SNARE motif and, in particular, the linker domain show transient and weak membrane binding, characterized by a high off-rate and low (millimolar) affinity. The transient membrane binding of syb-2 may compensate for the repulsive forces between the two membranes and/or the SNARE motifs and the membranes, helping to destabilize the hydrophilic-hydrophobic boundary in the bilayer. Therefore, we propose that optimum flexibility and membrane binding of syb-2 regulate SNARE assembly and minimize repulsive forces during membrane fusion.

Indexed as

AnimalsLipidsMagnetic Resonance SpectroscopyNeuronsProtein BindingR-SNARE ProteinsSNARE ProteinsVesicle-Associated Membrane Protein 2LipidsR-SNARE ProteinsSNARE ProteinsVesicle-Associated Membrane Protein 2dynamicsmembrane fusionneurotransmitter releaseNMRSNARE proteins

Identifiers

PMID30975750
PMCPMC6500178
OpenAlexW2937132049

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.