Evidence map›Paper›PMID 30975208›Full record

ArticleMicrobiome2019

Proliferation of hydrocarbon-degrading microbes at the bottom of the Mariana Trench.

Jiwen Liu, Yanfen Zheng, Heyu Lin, Xuchen Wang, Meng Li, Yang Liu, Meng Yu, Meixun Zhao, Nikolai Pedentchouk, David J Lea-Smith and 10 more

Open access · goldAbstract read
In one paragraph

Article in Microbiome, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
19.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 202 citations in OpenAlex.

  1. Article
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  11. High hydrostatic pressure stimulates n-CCommunications biology · 2025
    Article
  12. Article
  13. Article
  14. Alkane degradation mechanism ofFrontiers in microbiology · 2025
    Article
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  16. Article
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  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 2 countries.

Jiwen LiuMOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yanfen ZhengMOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Heyu LinMOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Xuchen WangKey Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Qingdao, 266100, China.
Meng LiInstitute for Advanced Study, Shenzhen University, Shenzhen, 518060, China.
Yang LiuInstitute for Advanced Study, Shenzhen University, Shenzhen, 518060, China.
Meng YuKey Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Qingdao, 266100, China.
Meixun ZhaoLaboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China.
Nikolai PedentchoukSchool of Environmental Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
David J Lea-SmithSchool of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
Jonathan D ToddSchool of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
Clayton R MagillLyell Centre, Heriot-Watt University, Edinburgh, EH14 4AS, UK.
Wei-Jia ZhangLaboratory of Deep Sea Microbial Cell Biology, Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, Sanya, 572000, China.
Shun ZhouMOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Delei SongMOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Haohui ZhongMOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yu XinLaboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China.
Min YuMOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Jiwei TianKey Laboratory of Physical Oceanography, Ministry of Education, Ocean University of China, Qingdao, 266100, China. tianjw@ouc.edu.cn.
Xiao-Hua ZhangMOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. xhzhang@ouc.edu.cn.
Ocean University of China · CNQingdao National Laboratory for Marine Science and Technology · CNUniversity of East Anglia · GBShenzhen University · CNChinese Academy of Sciences · CNHeriot-Watt University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Mariana Trench is the deepest known site in the Earth's oceans, reaching a depth of ~ 11,000 m at the Challenger Deep. Recent studies reveal that hadal waters harbor distinctive microbial planktonic communities. However, the genetic potential of microbial communities within the hadal zone is poorly understood.

resultsHere, implementing both culture-dependent and culture-independent methods, we perform extensive analysis of microbial populations and their genetic potential at different depths in the Mariana Trench. Unexpectedly, we observed an abrupt increase in the abundance of hydrocarbon-degrading bacteria at depths > 10,400 m in the Challenger Deep. Indeed, the proportion of hydrocarbon-degrading bacteria at > 10,400 m is the highest observed in any natural environment on Earth. These bacteria were mainly Oleibacter, Thalassolituus, and Alcanivorax genera, all of which include species known to consume aliphatic hydrocarbons. This community shift towards hydrocarbon degraders was accompanied by increased abundance and transcription of genes involved in alkane degradation. Correspondingly, three Alcanivorax species that were isolated from 10,400 m water supplemented with hexadecane were able to efficiently degrade n-alkanes under conditions simulating the deep sea, as did a reference Oleibacter strain cultured at atmospheric pressure. Abundant n-alkanes were observed in sinking particles at 2000, 4000, and 6000 m (averaged 23.5 μg/gdw) and hadal surface sediments at depths of 10,908, 10,909, and 10,911 m (averaged 2.3 μg/gdw). The δ

conclusionsThese results reveal that hydrocarbon-degrading microorganisms are present in great abundance in the deepest seawater on Earth and shed a new light on potential biological processes in this extreme environment.

Indexed as

BacteriaBacterial ProteinsBiodegradation, EnvironmentalGene Expression Regulation, BacterialHydrocarbonsPhylogenyPlanktonRNA, Ribosomal, 16SWater MicrobiologyBacterial ProteinsHydrocarbonsRNA, Ribosomal, 16SChallenger DeepHadal waterHydrocarbon biosynthesisHydrocarbon degradationMariana TrenchMetagenomicsMicrobial community

Identifiers

PMID30975208
PMCPMC6460516
OpenAlexW2937916685

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.