Evidence map›Paper›PMID 30974864›Full record

ArticleCells2019

Microrna-130a Downregulates HCV Replication through an atg5-Dependent Autophagy Pathway.

Xiaoqiong Duan, Xiao Liu, Wenting Li, Jacinta A Holmes, Annie J Kruger, Chunhui Yang, Yujia Li, Min Xu, Haiyan Ye, Shuang Li and 11 more

Open access · goldAbstract read
In one paragraph

Article in Cells, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. The Role of Human Endogenous Retrovirus (HERV)-K119International journal of molecular sciences · 2023
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. The Role of microRNAs in Cholangiocarcinoma.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 2 institutions in 3 countries.

Xiaoqiong DuanInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. xiaoqiongduan@yahoo.com.
Xiao LiuLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. scnydxlx@126.com.
Wenting LiLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. wtl9911002@163.com.
Jacinta A HolmesLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. jacinta_holmes@hotmail.com.
Annie J KrugerLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. annie.kruger@gunet.georgetown.edu.
Chunhui YangInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. yangchunhui@ibt.pumc.edu.cn.
Yujia LiInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. lily83630@163.com.
Min XuInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. xumin@ibt.pumc.edu.cn.
Haiyan YeInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. haiyan_ye0720@163.com.
Shuang LiInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. alyssa@bjmu.edu.cn.
Xinzhong LiaoInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. liaoxzxy@163.com.
Qiuju ShengLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. qq_agnes@163.com.
Dong ChenLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. gzbobsums2004@126.com.
Tuo ShaoLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. TSHAO@mgh.harvard.edu.
Zhimeng ChengLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. ZCHENG3@mgh.harvard.edu.
Batul KajLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. BKAJ@mgh.harvard.edu.
Esperance A SchaeferLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. eschaefer@mgh.harvard.edu.
Shilin LiInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. shilin-li@hotmail.com.
Limin ChenInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. limin_chen_99@yahoo.com.
Wenyu LinInstitute of Blood Transfusion, Chinese Academy of Medical Sciences and Peking Union Medical College, Chengdu 610052, China. wlin1@mgh.harvard.edu.ORCID 0000-0001-9913-9683
Raymond T ChungLiver Center and Gastrointestinal Division, Department of Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA. Chung.Raymond@mgh.harvard.edu.
Harvard University · USChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

Dissecting the role of hepatic macrophages in progressive NASHF32DK109658 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI KRUGER, ANNIE JOSEPH · 2016 to 2018
$152k
NIDDK NIH HHS F32 DK109658
6 · The paper itself

Abstract

We previously identified that miR-130a downregulates HCV replication through two independent pathways: restoration of host immune responses and regulation of pyruvate metabolism. In this study, we further sought to explore host antiviral target genes regulated by miR-130a. We performed a RT² Profiler™ PCR array to identify the host antiviral genes regulated by miR-130a. The putative binding sites between miR-130a and its downregulated genes were predicted by miRanda. miR-130a and predicted target genes were over-expressed or knocked down by siRNA or CRISPR/Cas9 gRNA. Selected gene mRNAs and their proteins, together with HCV replication in JFH1 HCV-infected Huh7.5.1 cells were monitored by qRT-PCR and Western blot. We identified 32 genes that were significantly differentially expressed more than 1.5-fold following miR-130a overexpression, 28 of which were upregulated and 4 downregulated. We found that ATG5, a target gene for miR-130a, significantly upregulated HCV replication and downregulated interferon stimulated gene expression. miR-130a downregulated ATG5 expression and its conjugation complex with ATG12. ATG5 and ATG5-ATG12 complex affected interferon stimulated gene (ISG) such as MX1 and OAS3 expression and subsequently HCV replication. We concluded that miR-130a regulates host antiviral response and HCV replication through targeting ATG5 via the ATG5-dependent autophagy pathway.

Indexed as

Gene Expression RegulationVirus ReplicationAutophagyAutophagy-Related Protein 12Autophagy-Related Protein 5Cell LineGenes, RegulatorHepacivirusHepatitis CHumansMicroRNAsATG12 protein, humanATG5 protein, humanAutophagy-Related Protein 12Autophagy-Related Protein 5MicroRNAsMIRN130 microRNA, humanautophagyautophagy-related genes 5 (ATG5), ATG12hepatitis C virus (HCV), interferon stimulated gene (ISG)miR-130a

Identifiers

PMID30974864
PMCPMC6523735
OpenAlexW2939890891

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.