Evidence map›Paper›PMID 30974150›Full record

ArticleMechanisms of development2019

Zebrafish otolith biomineralization requires polyketide synthase.

Kevin D Thiessen, Steven J Grzegorski, Yvonne Chin, Lisa N Higuchi, Christopher J Wilkinson, Jordan A Shavit, Kenneth L Kramer

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of development, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Advances in otolith-related protein research.Frontiers in neuroscience · 2022
    Review
  7. Article
  8. Cilia in the developing zebrafish ear.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  9. Review
  10. The biosynthetic diversity of the animal world.The Journal of biological chemistry · 2019
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kevin D ThiessenDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Steven J GrzegorskiDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, United States.
Yvonne ChinCentre for Biomedical Sciences, School of Biological Sciences, Royal Holloway University of London, Egham, TW20 0EX, United Kingdom.
Lisa N HiguchiDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States.
Christopher J WilkinsonCentre for Biomedical Sciences, School of Biological Sciences, Royal Holloway University of London, Egham, TW20 0EX, United Kingdom.
Jordan A ShavitDepartment of Pediatrics, University of Michigan, Ann Arbor, MI, United States.
Kenneth L KramerDepartment of Biomedical Sciences, Creighton University School of Medicine, Omaha, NE, United States. Electronic address: kenkramer@creighton.edu.
Creighton University · USRoyal Holloway University of London · GBUniversity of Michigan · US

Funding

TRANSGENIC EXPRESSION ANALYSIS OF MIRNA-144P20RR018788 · NCRR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI WESTON, MICHAEL D · 2003 to 2011
$16.5M
The Molecular Biology of Neurosurgery SystemsP20GM103471 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SMITH, SHELLEY D · 2012 to 2013
$4.1M
Dissecting the Genetics of Human Hemostatic Disorders Using ZebrafishR01HL124232 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHAVIT, JORDAN A · 2015 to 2019
$1.9M
Identification of novel therapeutics for hemostatic disorders using zebrafishR01HL125774 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHAVIT, JORDAN A · 2018 to 2020
$899k
NCRR NIH HHS P20 RR018788NHLBI NIH HHS R01 HL124232NHLBI NIH HHS R01 HL125774NIGMS NIH HHS P20 GM103471
6 · The paper itself

Abstract

Deflecting biomineralized crystals attached to vestibular hair cells are necessary for maintaining balance. Zebrafish (Danio rerio) are useful organisms to study these biomineralized crystals called otoliths, as many required genes are homologous to human otoconial development. We sought to identify and characterize the causative gene in a trio of homozygous recessive mutants, no content (nco) and corkscrew (csr), and vanished (vns), which fail to develop otoliths during early ear development. We show that nco, csr, and vns have potentially deleterious mutations in polyketide synthase (pks1), a multi-modular protein that has been previously implicated in biomineralization events in chordates and echinoderms. We found that Otoconin-90 (Oc90) expression within the otocyst is diffuse in nco and csr; therefore, it is not sufficient for otolith biomineralization in zebrafish. Similarly, normal localization of Otogelin, a protein required for otolith tethering in the otolithic membrane, is not sufficient for Oc90 attachment. Furthermore, eNOS signaling and Endothelin-1 signaling were the most up- and down-regulated pathways during otolith agenesis in nco, respectively. Our results demonstrate distinct processes for otolith nucleation and biomineralization in vertebrates and will be a starting point for models that are independent of Oc90-mediated seeding. This study will serve as a basis for investigating the role of eNOS signaling and Endothelin-1 signaling during otolith formation.

Indexed as

AnimalsBase SequenceBiomineralizationDNAEmbryo, NonmammalianGene Expression Regulation, DevelopmentalIonsMutationOryziasOtolithic MembranePlasmidsPolyketide SynthasesRNA, MessengerZebrafishZebrafish ProteinsDNAIonspks1 protein, zebrafishPolyketide SynthasesRNA, MessengerZebrafish ProteinsBiomineralizationCalcium carbonateEndothelin-1eNOSInner earOtolithPolyketide synthaseZebrafish

Identifiers

PMID30974150
PMCPMC6531356
OpenAlexW2953354339

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.