Evidence map›Paper›PMID 30973601›Full record

ArticleFEMS microbiology ecology2018

The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant.

Tiscar Graells, Helena Ishak, Madeleine Larsson, Lionel Guy

Open access · bronzeAbstract read
In one paragraph

Article in FEMS microbiology ecology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Tiscar GraellsDepartment of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Box 582, 75123 Uppsala, Sweden.
Helena IshakDepartment of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Box 582, 75123 Uppsala, Sweden.
Madeleine LarssonDepartment of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Box 582, 75123 Uppsala, Sweden.
Lionel GuyDepartment of Medical Biochemistry and Microbiology, Science for Life Laboratory, Uppsala University, Box 582, 75123 Uppsala, Sweden.
Uppsala University · SEUniversitat Autònoma de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Legionellales is an order of the Gammaproteobacteria, only composed of host-adapted, intracellular bacteria, including the accidental human pathogens Legionella pneumophila and Coxiella burnetii. Although the diversity in terms of lifestyle is large across the order, only a few genera have been sequenced, owing to the difficulty to grow intracellular bacteria in pure culture. In particular, we know little about their global distribution and abundance. Here, we analyze 16/18S rDNA amplicons both from tens of thousands of published studies and from two separate sampling campaigns in and around ponds and in a silver mine. We demonstrate that the diversity of the order is much larger than previously thought, with over 450 uncultured genera. We show that Legionellales are found in about half of the samples from freshwater, soil and marine environments and quasi-ubiquitous in man-made environments. Their abundance is low, typically 0.1%, with few samples up to 1%. Most Legionellales OTUs are globally distributed, while many do not belong to a previously identified species. This study sheds a new light on the ubiquity and diversity of one major group of host-adapted bacteria. It also emphasizes the need to use metagenomics to better understand the role of host-adapted bacteria in all environments.

Indexed as

Coxiella burnetiiDNA, RibosomalGeologic SedimentsHumansLegionella pneumophilaMetagenomicsRNA, Ribosomal, 16SRNA, Ribosomal, 18SSoil MicrobiologyWater MicrobiologyDNA, RibosomalRNA, Ribosomal, 16SRNA, Ribosomal, 18Sampliconsgeographical distributionhost-adapted bacterialegionellalegionellalesmetagenomics

Identifiers

PMID30973601
PMCPMC6167759
OpenAlexW2891719035

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.