Evidence map›Paper›PMID 30972865›Full record

ArticlePlant biotechnology journal2019

Efficient genetic transformation and CRISPR/Cas9-mediated genome editing in Lemna aequinoctialis.

Yu Liu, Yu Wang, Shuqing Xu, Xianfeng Tang, Jinshan Zhao, Changjiang Yu, Guo He, Hua Xu, Shumin Wang, Yali Tang and 3 more

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Review
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  11. Review
  12. Enzymatic Characterization ofPlants (Basel, Switzerland) · 2024
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Characterisation of a Spontaneous Mutant ofPlants (Basel, Switzerland) · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yu LiuCollege of Resources and Environment, Qingdao Agricultural University, Qingdao, China.
Yu WangKey Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China.
Shuqing XuInstitute for Evolution and Biodiversity, University of Münster, Münster, Germany.
Xianfeng TangCollege of Resources and Environment, Qingdao Agricultural University, Qingdao, China.
Jinshan ZhaoCollege of Resources and Environment, Qingdao Agricultural University, Qingdao, China.
Changjiang YuKey Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China.
Guo HeKey Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China.
Hua XuCollege of Resources and Environment, Qingdao Agricultural University, Qingdao, China.
Shumin WangKey Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China.
Yali TangKey Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China.
Chunxiang FuKey Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China.ORCID 0000-0003-2378-5122
Yubin MaKey Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Shandong Provincial Key Laboratory of Energy Genetics, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China.ORCID 0000-0003-1458-5751
Gongke ZhouCollege of Resources and Environment, Qingdao Agricultural University, Qingdao, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The fast growth, ease of metabolic labelling and potential for feedstock and biofuels production make duckweeds not only an attractive model system for understanding plant biology, but also a potential future crop. However, current duckweed research is constrained by the lack of efficient genetic manipulation tools. Here, we report a case study on genome editing in a duckweed species, Lemna aequinoctialis, using a fast and efficient transformation and CRISPR/Cas9 tool. By optimizing currently available transformation protocols, we reduced the duration time of Agrobacterium-mediated transformation to 5-6 weeks with a success rate of over 94%. Based on the optimized transformation protocol, we generated 15 (14.3% success rate) biallelic LaPDS mutants that showed albino phenotype using a CRISPR/Cas9 system. Investigations on CRISPR/Cas9-mediated mutation spectrum among mutated L. aequinoctialis showed that most of mutations were short insertions and deletions. This study presents the first example of CRISPR/Cas9-mediated genome editing in duckweeds, which will open new research avenues in using duckweeds for both basic and applied research.

Indexed as

CRISPR-Cas SystemsGene EditingAgrobacteriumAraceaeGenome, PlantTransformation, GeneticAgrobacterium-mediated transformationCRISPR/Cas9duckweedgenome editing

Identifiers

PMID30972865
PMCPMC6790374

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.