Evidence map›Paper›PMID 30971428›Full record

ArticleThe Journal of biological chemistry2019

Structural determinants for accurate dephosphorylation of RNA polymerase II by its cognate C-terminal domain (CTD) phosphatase during eukaryotic transcription.

Seema Irani, Sarah N Sipe, Wanjie Yang, Nathaniel T Burkholder, Brian Lin, Kelly Sim, Wendy L Matthews, Jennifer S Brodbelt, Yan Zhang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. ThrScience advances · 2024
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Ssu72 Dual-Specific Protein Phosphatase: From Gene to Diseases.International journal of molecular sciences · 2021
    Review
  9. Review
  10. Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Seema IraniDepartment of Chemical Engineering, The University of Texas, Austin, Texas 78712; Department of Molecular Biosciences, The University of Texas, Austin, Texas 78712.
Sarah N SipeDepartment of Chemistry, The University of Texas, Austin, Texas 78712.
Wanjie YangDepartment of Molecular Biosciences, The University of Texas, Austin, Texas 78712.
Nathaniel T BurkholderDepartment of Molecular Biosciences, The University of Texas, Austin, Texas 78712.
Brian LinDepartment of Molecular Biosciences, The University of Texas, Austin, Texas 78712.
Kelly SimDepartment of Molecular Biosciences, The University of Texas, Austin, Texas 78712.
Wendy L MatthewsDepartment of Molecular Biosciences, The University of Texas, Austin, Texas 78712.
Jennifer S BrodbeltDepartment of Chemistry, The University of Texas, Austin, Texas 78712.
Yan ZhangDepartment of Molecular Biosciences, The University of Texas, Austin, Texas 78712; Institute for Cellular and Molecular Biology, The University of Texas, Austin, Texas 78712. Electronic address: jzhang@cm.utexas.edu.
The University of Texas at Austin · US

Funding

Gene-specific transcriptional silencing directed by dephosphorylation of RNAP IIR01GM104896 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI ZHANG, YAN JESSIE · 2013 to 2022
$2.4M
Interpretation of the phosphorylation code of RNA polymerase II during eukaryotic transcriptionR01GM125882 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BRODBELT, JENNIFER S., ZHANG, YAN JESSIE · 2018 to 2021
$1.4M
NIGMS NIH HHS R01 GM104896NIGMS NIH HHS R01 GM125882
6 · The paper itself

Abstract

The C-terminal domain (CTD) of RNA polymerase II contains a repetitive heptad sequence (YSPTSPS) whose phosphorylation states coordinate eukaryotic transcription by recruiting protein regulators. The precise placement and removal of phosphate groups on specific residues of the CTD are critical for the fidelity and effectiveness of RNA polymerase II-mediated transcription. During transcriptional elongation, phosphoryl-Ser

Indexed as

Amino Acid MotifsAnimalsDrosophila melanogasterDrosophila ProteinsPhosphorylationProtein Tyrosine PhosphatasesRNA Polymerase IIDrosophila ProteinsProtein Tyrosine PhosphatasesRNA Polymerase IISsu72 protein, DrosophilaCTD codeDNA transcriptionintrinsically disordered proteinmass spectrometry (MS)phosphatasephosphoryl motifproline isomerizationRNA polymerase IItyrosine phosphorylationX-ray crystallography

Identifiers

PMID30971428
PMCPMC6544836
OpenAlexW2946658064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.