Evidence map›Paper›PMID 30969980›Full record

ArticlePloS one2019

A viral metagenomic survey identifies known and novel mammalian viruses in bats from Saudi Arabia.

Nischay Mishra, Shamsudeen F Fagbo, Abdulaziz N Alagaili, Adam Nitido, Simon H Williams, James Ng, Bohyun Lee, Abdulkareem Durosinlorun, Joel A Garcia, Komal Jain and 6 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Characterization of Three Novel Papillomavirus Genomes in Vampire Bats (Animals : an open access journal from MDPI · 2024
    Article
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  12. Revolutionized virome research using systems microbiology approaches.Experimental biology and medicine (Maywood, N.J.) · 2022
    Review
  13. Review
  14. Article
  15. Applied and environmental microbiology · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Nischay MishraCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.ORCID 0000-0002-1177-9641
Shamsudeen F FagboOne Health Unit, Executive Directorate for Surveillance and Response, National Center for Disease Prevention and Control, Riyadh, Saudi Arabia.
Abdulaziz N AlagailiKSU Mammals Research Chair, Department of Zoology, College of Science, King Saud University, Riyadh, Saudi Arabia.
Adam NitidoCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Simon H WilliamsCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
James NgCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Bohyun LeeCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Abdulkareem DurosinlorunFederal Ministry of Agriculture and Rural Development, Kaduna, Nigeria.
Joel A GarciaCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Komal JainCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Vishal KapoorCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Jonathan H EpsteinEcoHealth Alliance, New York, New York, United States of America.
Thomas BrieseCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Ziad A MemishThe College of Medicine, Al faisal University & Prince Mohammed Bin Abdulaziz Hospital, Ministry of Health, Riyadh, Kingdom of Saudi Arabia.
Kevin J OlivalEcoHealth Alliance, New York, New York, United States of America.
W Ian LipkinCenter for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, United States of America.
Columbia University · USEcoHealth Alliance · USAlfaisal University · SAFederal Ministry of Agriculture and Rural Development · NGKing Saud University · SASaudi Center for Disease Prevention and Control · SA

Funding

Translational CoreU19AI109761 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARIC, RALPH S · 2014 to 2018
$32.6M
NIAID NIH HHS U19 AI109761
6 · The paper itself

Abstract

Bats are implicated as natural reservoirs for a wide range of zoonotic viruses including SARS and MERS coronaviruses, Ebola, Marburg, Nipah, Hendra, Rabies and other lyssaviruses. Accordingly, many One Health surveillance and viral discovery programs have focused on bats. In this report we present viral metagenomic data from bats collected in the Kingdom of Saudi Arabia [KSA]. Unbiased high throughput sequencing of fecal samples from 72 bat individuals comprising four species; lesser mouse-tailed bat (Rhinopoma hardwickii), Egyptian tomb bat (Taphozous perforatus), straw-colored fruit bat (Eidolon helvum), and Egyptian fruit bat (Rousettus aegyptiacus) revealed molecular evidence of a diverse set of viral families: Picornaviridae (hepatovirus, teschovirus, parechovirus), Reoviridae (rotavirus), Polyomaviridae (polyomavirus), Papillomaviridae (papillomavirus), Astroviridae (astrovirus), Caliciviridae (sapovirus), Coronaviridae (coronavirus), Adenoviridae (adenovirus), Paramyxoviridae (paramyxovirus), and unassigned mononegavirales (chuvirus). Additionally, we discovered a bastro-like virus (Middle East Hepe-Astrovirus), with a genomic organization similar to Hepeviridae. However, since it shared homology with Hepeviridae and Astroviridae at ORF1 and in ORF2, respectively, the newly discovered Hepe-Astrovirus may represent a phylogenetic bridge between Hepeviridae and Astroviridae.

Indexed as

MetagenomicsPhylogenyAnimalsCaliciviridaeChiropteraEgyptFecesHigh-Throughput Nucleotide SequencingHumansMammalsMetagenomeMiddle EastMiddle East Respiratory Syndrome CoronavirusParamyxoviridaePicornaviridaeRNA Viruses

Identifiers

PMID30969980
PMCPMC6457491
OpenAlexW2938641297

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.