Evidence map›Paper›PMID 30968111›Full record

ArticleBrain : a journal of neurology2019

A mutation in the major autophagy gene, WIPI2, associated with global developmental abnormalities.

Musharraf Jelani, Hannah C Dooley, Andrea Gubas, Hussein Sheikh Ali Mohamoud, Muhammad Tariq Masood Khan, Zahir Ali, Changsoo Kang, Fazal Rahim, Amin Jan, Nirmal Vadgama and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Brain : a journal of neurology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
  2. Synaptic Proteostasis in Health and Disease.Journal of neurochemistry · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Mitochondrial dysfunction, cause or consequence in neurodegenerative diseases?BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Autophagy genes in biology and disease.Nature reviews. Genetics · 2023
    Review
  17. Article
  18. Article
  19. Mutations inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 4 countries.

Musharraf JelaniDepartment of Genetic Medicine, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia.
Hannah C DooleyThe Francis Crick Institute, Molecular Cell Biology of Autophagy, London, UK.
Andrea GubasThe Francis Crick Institute, Molecular Cell Biology of Autophagy, London, UK.
Hussein Sheikh Ali MohamoudSW Thames Regional Genetics Laboratory, St. George's University Hospitals NHS Foundation Trust, UK.
Muhammad Tariq Masood KhanNorth West School of Medicine, Peshawar, Pakistan.
Zahir AliLaboratory for Genome Engineering, Division of Biological Sciences, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia.
Changsoo KangDepartment of Biology and Institute of Basic Sciences, Sungshin Women's University, Seoul, Republic of Korea.
Fazal RahimDepartment of Physiology, Bacha Khan Medical College, Mardan, Pakistan.
Amin JanNorth West School of Medicine, Peshawar, Pakistan.
Nirmal VadgamaGenetics Unit, Cell Biology and Genetics Research Centre, Molecular and Clinical Sciences Research Institute, St. George's University of London, London, UK.
Muhammad Ismail KhanZoology Department, Islamia College University, Peshawar, Pakistan.
Jumana Yousuf Al-AamaDepartment of Genetic Medicine, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia.
Asifullah KhanDepartment of Biochemistry, Abdul Wali Khan University Mardan, Pakistan.
Sharon A ToozeThe Francis Crick Institute, Molecular Cell Biology of Autophagy, London, UK.
Jamal NasirGenetics Unit, Cell Biology and Genetics Research Centre, Molecular and Clinical Sciences Research Institute, St. George's University of London, London, UK.
The Francis Crick Institute · GBIslamia College University · PKKing Abdulaziz University · SASt George's, University of London · GBAbdul Wali Khan University Mardan · PKBacha Khan University · PKKing Abdullah University of Science and Technology · SANorthwest General Hospital and Research Center · PKSt George’s University Hospitals NHS Foundation Trust · GBSungshin Women's University · KR

Funding

Medical Research CouncilWellcome Trust FC001187
6 · The paper itself

Abstract

We describe a large consanguineous pedigree from a remote area of Northern Pakistan, with a complex developmental disorder associated with wide-ranging symptoms, including mental retardation, speech and language impairment and other neurological, psychiatric, skeletal and cardiac abnormalities. We initially carried out a genetic study using the HumanCytoSNP-12 v2.1 Illumina gene chip on nine family members and identified a single region of homozygosity shared amongst four affected individuals on chromosome 7p22 (positions 3059377-5478971). We performed whole-exome sequencing on two affected individuals from two separate branches of the extended pedigree and identified a novel nonsynonymous homozygous mutation in exon 9 of the WIPI2 (WD-repeat protein interacting with phosphoinositide 2) gene at position 5265458 (c.G745A;pV249M). WIPI2 plays a critical role in autophagy, an evolutionary conserved cellular pathway implicated in a growing number of medical conditions. The mutation is situated in a highly conserved and critically important region of WIPI2, responsible for binding PI(3)P and PI(3,5)P2, an essential requirement for autophagy to proceed. The mutation is absent in all public databases, is predicted to be damaging and segregates with the disease phenotype. We performed functional studies in vitro to determine the potential effects of the mutation on downstream pathways leading to autophagosome assembly. Binding of the V231M mutant of WIPI2b to ATG16L1 (as well as ATG5-12) is significantly reduced in GFP pull-down experiments, and fibroblasts derived from the patients show reduced WIPI2 puncta, reduced LC3 lipidation and reduced autophagic flux.

Indexed as

AdultAmino Acid SequenceAutophagyCells, CulturedDevelopmental DisabilitiesFemaleHEK293 CellsHumansMaleMembrane ProteinsMiddle AgedMutationPedigreePhosphate-Binding ProteinsProtein Structure, SecondaryMembrane ProteinsPhosphate-Binding ProteinsWIPI2 protein, humanautophagyexome sequencinggeneLC3WIPI2

Identifiers

PMID30968111
PMCPMC6487338
OpenAlexW2939331244

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.