Evidence map›Paper›PMID 30967866›Full record

ArticleFrontiers in immunology2019

Immunometabolic Signatures Predict Risk of Progression to Active Tuberculosis and Disease Outcome.

Fergal J Duffy, January Weiner, Scott Hansen, David L Tabb, Sara Suliman, Ethan Thompson, Jeroen Maertzdorf, Smitha Shankar, Gerard Tromp, Shreemanta Parida and 11 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Article
  3. Observational
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Biomarker discovery for tuberculosis using metabolomics.Frontiers in molecular biosciences · 2023
    Review
  11. Review
  12. Article
  13. Review
  14. Host lipidome and tuberculosis treatment failure.The European respiratory journal · 2022
    Article
  15. Article
  16. Review
  17. Increased UBE2L6 regulated by type 1 interferon as potential marker in TB.Journal of cellular and molecular medicine · 2021
    Article
  18. Review
  19. Metabolic Versatility ofMetabolites · 2021
    Review
  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 11 institutions in 6 countries.

Fergal J DuffyCenter for Global Infectious Disease Research, Seattle Childrens Research Institute, Seattle, WA, United States.
January WeinerMax Planck Institute for Infection Biology, Berlin, Germany.
Scott HansenOregon Health and Science University, Portland, OR, United States.
David L TabbDivision of Molecular Biology and Human Genetics, Department of Biomedical Sciences, SAMRC-SHIP South African Tuberculosis Bioinformatics Initiative (SATBBI), Center for Bioinformatics and Computational Biology, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Stellenbosch University, Stellenbosch, South Africa.
Sara SulimanDepartment of Pathology, South African Tuberculosis Vaccine Initiative, Institute of Infectious Disease and Molecular Medicine & Division of Immunology, University of Cape Town, Cape Town, South Africa.
Ethan ThompsonCenter for Infectious Disease Research, Seattle, WA, United States.
Jeroen MaertzdorfMax Planck Institute for Infection Biology, Berlin, Germany.
Smitha ShankarCenter for Infectious Disease Research, Seattle, WA, United States.
Gerard TrompDivision of Molecular Biology and Human Genetics, Department of Biomedical Sciences, SAMRC-SHIP South African Tuberculosis Bioinformatics Initiative (SATBBI), Center for Bioinformatics and Computational Biology, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Stellenbosch University, Stellenbosch, South Africa.
Shreemanta ParidaMax Planck Institute for Infection Biology, Berlin, Germany.
Drew DoverCenter for Global Infectious Disease Research, Seattle Childrens Research Institute, Seattle, WA, United States.
Michael K AxthelmOregon Health and Science University, Portland, OR, United States.
Jayne S SutherlandVaccines & Immunity Theme, Medical Research Council Unit, Fajara, Gambia.
Hazel M DockrellDepartment of Immunology and Infection, London School of Hygiene and Tropical Medicine, London, United Kingdom.
Tom H M OttenhoffDepartment of Infectious Diseases, Leiden University Medical Center, Leiden, Netherlands.
Thomas J ScribaDepartment of Pathology, South African Tuberculosis Vaccine Initiative, Institute of Infectious Disease and Molecular Medicine & Division of Immunology, University of Cape Town, Cape Town, South Africa.
Louis J PickerOregon Health and Science University, Portland, OR, United States.
Gerhard WalzlDivision of Molecular Biology and Human Genetics, Department of Biomedical Sciences, SAMRC-SHIP South African Tuberculosis Bioinformatics Initiative (SATBBI), Center for Bioinformatics and Computational Biology, DST/NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Stellenbosch University, Stellenbosch, South Africa.
Stefan H E KaufmannMax Planck Institute for Infection Biology, Berlin, Germany.
Daniel E ZakCenter for Infectious Disease Research, Seattle, WA, United States.
GC6-74 Consortium
Max Planck Institute for Infection Biology · DEInfectious Disease Research Institute · USOregon Health & Science University · USCenter for Infectious Disease Research · USSouth African Medical Research Council · ZALeiden University Medical Center · NLLondon School of Hygiene & Tropical Medicine · GBMRC Unit the Gambia · GMSouth African Tuberculosis Vaccine Initiative · ZAStellenbosch University · ZAUniversity of Cape Town · ZA

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Technology CoreU19AI106761 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI SHERMAN, DAVID R, ZAK, DANIEL E · 2013 to 2017
$18.9M
TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
Technology CoreU19AI135976 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI ADEREM, ALAN A · 2018 to 2022
$17.0M
Medical Research Council MC_U190071468Medical Research Council MC_UP_A900_1122NIAID NIH HHS U19 AI106761NIAID NIH HHS U19 AI135976NIGMS NIH HHS P41 GM109824NIH HHS P51 OD011092
6 · The paper itself

Abstract

There remains a pressing need for biomarkers that can predict who will progress to active tuberculosis (TB) after exposure to Mycobacterium tuberculosis (MTB) bacterium. By analyzing cohorts of household contacts of TB index cases (HHCs) and a stringent non-human primate (NHP) challenge model, we evaluated whether integration of blood transcriptional profiling with serum metabolomic profiling can provide new understanding of disease processes and enable improved prediction of TB progression. Compared to either alone, the combined application of pre-existing transcriptome- and metabolome-based signatures more accurately predicted TB progression in the HHC cohorts and more accurately predicted disease severity in the NHPs. Pathway and data-driven correlation analyses of the integrated transcriptional and metabolomic datasets further identified novel immunometabolomic signatures significantly associated with TB progression in HHCs and NHPs, implicating cortisol, tryptophan, glutathione, and tRNA acylation networks. These results demonstrate the power of multi-omics analysis to provide new insights into complex disease processes.

Indexed as

TuberculosisAdolescentAdultAfricaAnimalsBiomarkersDisease ProgressionFemaleHumansMacaca mulattaMaleMetabolomeMycobacterium tuberculosisTranscriptomeTuberculosis VaccinesYoung AdultBiomarkersTuberculosis Vaccinesbiomarkerhost-pathogen interactionhousehold contactinflammationmetabolomicsrhesus macaquetranscriptomicstuberculosis

Identifiers

PMID30967866
PMCPMC6440524
OpenAlexW2939217463

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.