ArticlePolymers2017
Topological Models for Open-Knotted Protein Chains Using the Concepts of Knotoids and Bonded Knotoids.
Article in Polymers, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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6 citing papers in PubMed, 60 citations in OpenAlex.
- Theta-curves in proteins.Protein science : a publication of the Protein Society · 2024Article
- Evolutionary Khovanov homology.AIMS mathematics · 2024Article
- Article
- The protein folding rate and the geometry and topology of the native state.Scientific reports · 2022Article
- Knot polynomials of open and closed curves.Proceedings. Mathematical, physical, and engineering sciences · 2020Article
- KnotProt 2.0: a database of proteins with knots and other entangled structures.Nucleic acids research · 2019Article
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6 authors at 3 institutions in 3 countries.
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Abstract
In this paper we introduce a method that offers a detailed overview of the entanglement of an open protein chain. Further, we present a purely topological model for classifying open protein chains by also taking into account any bridge involving the backbone. To this end, we implemented the concepts of planar knotoids and bonded knotoids. We show that the planar knotoids technique provides more refined information regarding the knottedness of a protein when compared to established methods in the literature. Moreover, we demonstrate that our topological model for bonded proteins is robust enough to distinguish all types of lassos in proteins.
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