Evidence map›Paper›PMID 30962621›Full record

ArticleNature methods2019

High-throughput identification of dominant negative polypeptides in yeast.

Michael W Dorrity, Christine Queitsch, Stanley Fields

Open access · greenAbstract read
In one paragraph

Article in Nature methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. High-throughput discovery of inhibitory protein fragments with AlphaFold.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. High-throughput discovery of inhibitory protein fragments with AlphaFold.bioRxiv : the preprint server for biology · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Mapping functional regions of essential bacterial proteins with dominant-negative protein fragments.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The Multifaceted Role of HSF1 in Tumorigenesis.Advances in experimental medicine and biology · 2020
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Michael W DorrityDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Christine QueitschDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Stanley FieldsDepartment of Genome Sciences, University of Washington, Seattle, WA, USA. fields@uw.edu.ORCID http://orcid.org/0000-0001-5504-5925
University of Washington · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Technology to understand genetic variant effects in contextRM1HG010461 · NHGRI · UNIVERSITY OF WASHINGTON · PI Douglas M Fowler, Bruce Colston Trapnell · 2019 to 2026
$18.9M
Understanding gene regulation in contextR35GM139532 · NIGMS · UNIVERSITY OF WASHINGTON · PI Christine Queitsch · 2021 to 2026
$3.3M
A yeast model of complex disease geneticsR01GM114166 · NIGMS · UNIVERSITY OF WASHINGTON · PI QUEITSCH, CHRISTINE · 2015 to 2018
$1.2M
NHGRI NIH HHS RM1 HG010461NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM114166NIGMS NIH HHS R35 GM139532
6 · The paper itself

Abstract

Dominant negative polypeptides can inhibit protein function by binding to a wild-type subunit or by titrating a ligand. Here we use high-throughput sequencing of libraries composed of fragments of yeast genes to identify polypeptides that act in a dominant negative manner, in that they are depleted during cell growth. The method can uncover numerous inhibitory polypeptides for a protein and thereby define small inhibitory regions, even pinpointing individual residues with critical functional roles.

Indexed as

Genes, DominantGenes, FungalDNA-Binding ProteinsGene LibraryHeat-Shock ProteinsHigh-Throughput Nucleotide SequencingPeptidesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Analysis, DNATranscription FactorsDNA-Binding ProteinsHeat-Shock ProteinsHSF1 protein, S cerevisiaePeptidesSaccharomyces cerevisiae ProteinsTranscription FactorsURA3 protein, S cerevisiae

Identifiers

PMID30962621
PMCPMC6555411
OpenAlexW2952781962

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.