ArticleScientific reports2019
Comparative transcriptome profiling of low light tolerant and sensitive rice varieties induced by low light stress at active tillering stage.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed.
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- Genome-wide association analysis to identify QTLs and candidate genes associated with grain yield and its related traits under low light conditions in rice (Oryza sativa L.).The plant genome · 2026Article
- Shade tolerance is associated with foliar adaptations, improved radiation use efficiency, and photosynthetic rate in rice.Scientific reports · 2025Article
- Identification of Novel Quantitative Trait Loci and Candidate Genes Associated with Grain Yield and Related Traits Under Low-Light Stress Conditions in Rice.Biomolecules · 2025Article
- Integrative analysis of different low-light-tolerant watermelon lines in response to low-light stress.BMC plant biology · 2025Article
- Can autophagy enhance crop resilience to environmental stress?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025Review
- Physiological and Transcriptome Responses of Sweet Potato [Plants (Basel, Switzerland) · 2024Article
- Proteomic and metabolomic revealed the effect of shading treatment on cigar tobacco.Frontiers in plant science · 2024Article
- Biomass enhancement and activation of transcriptional regulation in sorghum seedling by plasma-activated water.Frontiers in plant science · 2024Article
- Genome-wide identification and expression analysis of the cryptochromes reveal theFrontiers in plant science · 2024Article
- Effects of Light Intensity on Growth and Quality of Lettuce and Spinach Cultivars in a Plant Factory.Plants (Basel, Switzerland) · 2023Article
- Sequence Characteristics and Expression Analysis of the Gene Encoding Sedoheptulose-1,7-Bisphosphatase, an Important Calvin Cycle Enzyme in Upland Cotton (International journal of molecular sciences · 2023Article
- Changes in physio-biochemical parameters and expression of metallothioneins in Avena sativa L. in response to drought.Scientific reports · 2023Article
- Identification of potential light deficiency response regulators in endangered species Magnolia sinostellata.Scientific reports · 2022Article
- Identification of microRNAs That Provide a Low Light Stress Tolerance-Mediated Signaling Pathway during Vegetative Growth in Rice.Plants (Basel, Switzerland) · 2022Article
- Transcriptome analysis reveals the accelerated expression of genes related to photosynthesis and chlorophyll biosynthesis contribution to shade-tolerant in Phoebe bournei.BMC plant biology · 2022Article
- Article
- The role of phytochrome-mediated gibberellic acid signaling in the modulation of seed germination under low light stress in rice (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Integrative analysis of different low-light-tolerant cucumber lines in response to low-light stress.Frontiers in plant science · 2022Article
- The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization.Frontiers in plant science · 2022Article
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13 authors.
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Abstract
Low light intensity is a great limitation for grain yield and quality in rice. However, yield is not significantly reduced in low light tolerant rice varieties. The work therefore planned for comparative transcriptome profiling under low light stress to decipher the genes involved and molecular mechanism of low light tolerance in rice. At active tillering stage, 50% low light exposure for 1 day, 3 days and 5 days were given to Swarnaprabha (low light tolerant) and IR8 (low light sensitive) rice varieties. Illumina (HiSeq) platform was used for transcriptome sequencing. A total of 6,652 and 12,042 genes were differentially expressed due to low light intensity in Swarnaprabha and IR8, respectively as compared to control. CAB, LRP, SBPase, MT15, TF PCL1 and Photosystem I & II complex related gene expressions were mostly increased in Swarnaprabha upon longer duration of low light exposure which was not found in IR8 as compared to control. Their expressions were validated by qRT-PCR. Overall study suggested that the maintenance of grain yield in the tolerant variety under low light might be results of accelerated expression of the genes which enable the plant to keep the photosynthetic processes moving at the same pace even under low light.
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