Evidence map›Paper›PMID 30962514›Full record

ArticleThe ISME journal2019

Insights into ecological role of a new deltaproteobacterial order Candidatus Acidulodesulfobacterales by metagenomics and metatranscriptomics.

Sha Tan, Jun Liu, Yun Fang, Brian P Hedlund, Zheng-Han Lian, Li-Ying Huang, Jin-Tian Li, Li-Nan Huang, Wen-Jun Li, Hong-Chen Jiang and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 128 citations in OpenAlex.

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  19. Characterization of DsrD and its interaction with the DsrAB dissimilatory sulfite reductase.Protein science : a publication of the Protein Society · 2024
    Article
  20. The dynamic history of prokaryotic phyla: discovery, diversity and division.International journal of systematic and evolutionary microbiology · 2024
    Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Sha Tan *State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.ORCID http://orcid.org/0000-0002-6891-9502
Jun Liu *State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Yun Fang *State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074, Wuhan, China.
Brian P HedlundSchool of Life Sciences, University of Nevada Las Vegas, Las Vegas, NV, 89154, USA.ORCID http://orcid.org/0000-0001-8530-0448
Zheng-Han LianState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Li-Ying HuangState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Jin-Tian LiSchool of Life Sciences, South China Normal University, 510631, Guangzhou, China.
Li-Nan HuangState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.
Wen-Jun LiState Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, 510275, Guangzhou, China.ORCID http://orcid.org/0000-0002-1233-736X
Hong-Chen JiangState Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, 430074, Wuhan, China.
Hai-Liang DongDepartment of Geology and Environmental Earth Science, Miami University, Oxford, OH, 45056, USA. dongh@miamioh.edu.
Wen-Sheng ShuSchool of Life Sciences, South China Normal University, 510631, Guangzhou, China. zsushuwensheng@163.com.
Sun Yat-sen University · CNChina University of Geosciences · CNSouth China Normal University · CNChina University of Geosciences (Beijing) · CNUniversity of Nevada, Las Vegas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several abundant but yet uncultivated bacterial groups exist in extreme iron- and sulfur-rich environments, and the physiology, biodiversity, and ecological roles of these bacteria remain a mystery. Here we retrieved four metagenome-assembled genomes (MAGs) from an artificial acid mine drainage (AMD) system, and propose they belong to a new deltaproteobacterial order, Candidatus Acidulodesulfobacterales. The distribution pattern of Ca. Acidulodesulfobacterales in AMDs across Southeast China correlated strongly with ferrous iron. Reconstructed metabolic pathways and gene expression profiles showed that they were likely facultatively anaerobic autotrophs capable of nitrogen fixation. In addition to dissimilatory sulfate reduction, encoded by dsrAB, dsrD, dsrL, and dsrEFH genes, these microorganisms might also oxidize sulfide, depending on oxygen concentration and/or oxidation reduction potential. Several genes with homology to those involved in iron metabolism were also identified, suggesting their potential role in iron cycling. In addition, the expression of abundant resistance genes revealed the mechanisms of adaptation and response to the extreme environmental stresses endured by these organisms in the AMD environment. These findings shed light on the distribution, diversity, and potential ecological role of the new order Ca. Acidulodesulfobacterales in nature.

Indexed as

BiodiversityTranscriptomeAdaptation, PhysiologicalChinaDeltaproteobacteriaEcologyGene Expression ProfilingIronMetagenomeMetagenomicsMiningNitrogen FixationOxidation-ReductionOxygenStress, PhysiologicalSulfidesIronOxygenSulfidesSulfur

Identifiers

PMID30962514
PMCPMC6776010
OpenAlexW2930346675

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.