Evidence map›Paper›PMID 30961429›Full record

ArticleNucleus (Austin, Tex.)2019

Comprehensive nuclear proteome of Arabidopsis obtained by sequential extraction.

Chieko Goto, Shoko Hashizume, Yoichiro Fukao, Ikuko Hara-Nishimura, Kentaro Tamura

Abstract read
In one paragraph

Article in Nucleus (Austin, Tex.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. A multiomics atlas of theScience advances · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Function of Nuclear Pore Complexes in Regulation of Plant Defense Signaling.International journal of molecular sciences · 2022
    Review
  9. Review
  10. Article
  11. Nucleus (Austin, Tex.) · 2021
    Article
  12. Review
  13. LC-MS Based Draft Map of theFrontiers in plant science · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Chieko Gotoa Graduate School of Agricultural and Life Sciences , University of Tokyo , Tokyo , Japan.
Shoko Hashizumeb Department of Botany , Graduate School of Science, Kyoto University , Kyoto , Japan.
Yoichiro Fukaoc Department of Bioinformatics , College of Life Sciences, Ritsumeikan University , Shiga , Japan.
Ikuko Hara-Nishimurad Faculty of Science and Engineering , Konan University , Kobe , Japan.ORCID 0000-0001-8814-1593
Kentaro Tamurae Department of Environmental and Life Sciences , University of Shizuoka , Shizuoka , Japan.ORCID 0000-0001-7387-2211

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In eukaryotes, the nucleus plays key roles in fundamental cellular processes, including DNA replication, chromatin maintenance, transcription, and translation. To better understand the functional diversity of nuclei, we developed a method for the comprehensive extraction of the nuclear proteome from Arabidopsis. We used a buffer with a high sucrose concentration to purify nuclei and then conducted solubility-based fractionation to increase proteome coverage. We identified 1539 proteins and two novel nuclear envelope (NE) proteins in the nuclear fraction of Arabidopsis cultured cells. The localization of 25 proteins was determined by GFP fusion analyses; 23 of these proteins were localized either in the nucleus or the NE-associated endoplasmic reticulum. This result was indicative of the high quality of the proteome. These findings will be useful for clarifying novel nuclear functions in plants.

Indexed as

ArabidopsisArabidopsis ProteinsCell NucleusCells, CulturedComputational BiologyNuclear EnvelopeProteomeProteomicsSolubilitySucroseArabidopsis ProteinsProteomeSucroseArabidopsis thalianacultured cellsmass spectrometrynuclear bodiesnuclear envelopenucleolusnucleusproteome

Identifiers

PMID30961429
PMCPMC6527390

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.