Evidence map›Paper›PMID 30959526›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2020

Impact of 10-Valent Pneumococcal Conjugate Vaccine Introduction on Pneumococcal Carriage and Antibiotic Susceptibility Patterns Among Children Aged <5 Years and Adults With Human Immunodeficiency Virus Infection: Kenya, 2009-2013.

Miwako Kobayashi, Godfrey Bigogo, Lindsay Kim, Ondari D Mogeni, Laura M Conklin, Arthur Odoyo, Herine Odiembo, Fabiana Pimenta, Dominic Ouma, Aaron M Harris and 13 more

Abstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
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  5. Article
  6. Genomic characterization ofMicrobial genomics · 2025
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  14. Human Immunodeficiency Virus Infection Is Associated With Increased Meningococcal Carriage Acquisition Among First-year Students in 2 South African Universities.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Streptococcus pneumoniae Acquisition and Carriage.Indian journal of pediatrics · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Miwako KobayashiRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Godfrey BigogoCentre for Global Health Research, Kenya Medical Research Institute, Kisumu.
Lindsay KimRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Ondari D MogeniCentre for Global Health Research, Nairobi, Kenya.
Laura M ConklinRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Arthur OdoyoCentre for Global Health Research, Kenya Medical Research Institute, Kisumu.
Herine OdiemboCentre for Global Health Research, Kenya Medical Research Institute, Kisumu.
Fabiana PimentaRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Dominic OumaCentre for Global Health Research, Nairobi, Kenya.
Aaron M HarrisRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Kennedy OderoCentre for Global Health Research, Nairobi, Kenya.
Jennifer L MiluckyRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Alice OumaCentre for Global Health Research, Nairobi, Kenya.
George AolCentre for Global Health Research, Kenya Medical Research Institute, Kisumu.
Allan AudiCentre for Global Health Research, Kenya Medical Research Institute, Kisumu.
Clayton OnyangoGlobal Disease Detection Division, Centers for Disease Control and Prevention, Nairobi.
Leonard CosmasGlobal Disease Detection Division, Centers for Disease Control and Prevention, Nairobi.
Geofrey JageroCentre for Global Health Research, Kenya Medical Research Institute, Kisumu.
Jennifer L FarrarRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Maria da Gloria CarvalhoRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Cynthia G WhitneyRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.
Robert F BreimanCentre for Global Health Research, Nairobi, Kenya.
Fernanda C LessaRespiratory Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia.

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

backgroundKenya introduced 10-valent pneumococcal conjugate vaccine (PCV10) among children <1 year in 2011 with catch-up vaccination among children 1-4 years in some areas. We assessed changes in pneumococcal carriage and antibiotic susceptibility patterns in children <5 years and adults.

methodsDuring 2009-2013, we performed annual cross-sectional pneumococcal carriage surveys in 2 sites: Kibera (children <5 years) and Lwak (children <5 years, adults). Only Lwak had catch-up vaccination. Nasopharyngeal and oropharyngeal (adults only) swabs underwent culture for pneumococci; isolates were serotyped. Antibiotic susceptibility testing was performed on isolates from 2009 and 2013; penicillin nonsusceptible pneumococci (PNSP) was defined as penicillin-intermediate or -resistant. Changes in pneumococcal carriage by age (<1 year, 1-4 years, adults), site, and human immunodeficiency virus (HIV) status (adults only) were calculated using modified Poisson regression, with 2009-2010 as baseline.

resultsWe enrolled 2962 children (2073 in Kibera, 889 in Lwak) and 2590 adults (2028 HIV+, 562 HIV-). In 2013, PCV10-type carriage was 10.3% (Lwak) to 14.6% (Kibera) in children <1 year and 13.8% (Lwak) to 18.7% (Kibera) in children 1-4 years. This represents reductions of 60% and 63% among children <1 year and 52% and 60% among children 1-4 years in Kibera and Lwak, respectively. In adults, PCV10-type carriage decreased from 12.9% to 2.8% (HIV+) and from 11.8% to 0.7% (HIV-). Approximately 80% of isolates were PNSP, both in 2009 and 2013.

conclusionsPCV10-type carriage declined in children <5 years and adults post-PCV10 introduction. However, PCV10-type and PNSP carriage persisted in children regardless of catch-up vaccination.

Indexed as

HIV InfectionsPneumococcal InfectionsAdultAgedAnti-Bacterial AgentsCarrier StateChildChild, PreschoolCross-Sectional StudiesHIVHumansInfantKenyaNasopharynxPneumococcal Vaccines10-valent pneumococcal conjugate vaccineAnti-Bacterial AgentsPneumococcal Vaccines10-valent pneumococcal conjugate vaccineantibiotic nonsusceptibilitycatch-up vaccinationpneumococcal carriageStreptococcus pneumoniae

Identifiers

PMID30959526
PMCPMC6942635

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.