Evidence map›Paper›PMID 30958311›Full record

ArticleJournal of neuromuscular diseases2019

Modifier Gene Candidates in Charcot-Marie-Tooth Disease Type 1A: A Case-Only Genome-Wide Association Study.

Feifei Tao, Gary W Beecham, Adriana P Rebelo, Susan H Blanton, John J Moran, Camila Lopez-Anido, John Svaren, Lisa Abreu, Devon Rizzo, Callyn A Kirk and 19 more

Abstract read
In one paragraph

Article in Journal of neuromuscular diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Testing SIPA1L2 as a modifier of CMT1A using mouse models.Journal of neuropathology and experimental neurology · 2024
    Article
  8. Article
  9. Review
  10. Mechanisms and Treatments in Demyelinating CMT.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2021
    Review
  11. Emerging Therapies for Charcot-Marie-Tooth Inherited Neuropathies.International journal of molecular sciences · 2021
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Clinical and Genetic Diversity ofFrontiers in neurology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Feifei TaoDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL, USA.
Gary W BeechamDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL, USA.
Adriana P RebeloDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL, USA.
Susan H BlantonDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL, USA.
John J MoranDepartment of Comparative Biosciences and Waisman Center, University of Wisconsin, Madison, WI, USA.
Camila Lopez-AnidoDepartment of Comparative Biosciences and Waisman Center, University of Wisconsin, Madison, WI, USA.
John SvarenDepartment of Comparative Biosciences and Waisman Center, University of Wisconsin, Madison, WI, USA.
Lisa AbreuDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL, USA.
Devon RizzoData Management and Coordinating Center, Rare Diseases Clinical Research Network, Pediatrics Epidemiology Center, University of South Florida, Tampa, FL, USA.
Callyn A KirkData Management and Coordinating Center, Rare Diseases Clinical Research Network, Pediatrics Epidemiology Center, University of South Florida, Tampa, FL, USA.
Xingyao WuDepartment of Neurology, University of Iowa, Iowa City, IA, USA.
Shawna FeelyDepartment of Neurology, University of Iowa, Iowa City, IA, USA.
Camiel VerhammeDepartment of Neurology, Academic Medical Centre, Amsterdam, The Netherlands.
Mario A SaportaDepartment of Neurology, University of Miami, Miami, FL, USA.
David N HerrmannDepartment of Neurology, University of Rochester, Rochester, NY, USA.
John W DayDepartment of Neurology, Stanford University, Palo Alto, CA, USA.
Charlotte J SumnerDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Thomas E LloydDepartment of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Jun LiDepartment of Neurology, Wayne State University School of Medicine, Detroit, MI, USA.
Sabrina W YumDivision of Neurology, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Franco TaroniIRCCS Foundation Carlo Besta Neurological Institute, Milan, Italy.
Frank BaasDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Byung-Ok ChoiDepartment of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Korea.
Davide PareysonIRCCS Foundation Carlo Besta Neurological Institute, Milan, Italy.
Steven S SchererDepartment of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Mary M ReillyMRC Centre for Neuromuscular Diseases, UCL Institute of Neurology, Queen Square, London, UK.
Michael E ShyDepartment of Neurology, University of Iowa, Iowa City, IA, USA.
Stephan ZüchnerDepartment for Human Genetics and Hussman Institute for Human Genomics, University of Miami, Miami, FL, USA.
Inherited Neuropathy Consortium

Funding

trainingU54NS065712 · NINDS · WAYNE STATE UNIVERSITY · PI SHY, MICHAEL E. · 2009 to 2023
$19.6M
Waisman Intellectual and Developmental Disabilities Research Center Down Syndrome RegistryU54HD090256 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI POLLAK, SETH D · 2016 to 2020
$6.0M
Institutional Career Development CoreKL2TR002737 · NCATS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI RUNDEK, TATJANA, SCOTT, GWENDOLYN BARBARA · 2018 to 2022
$3.6M
Axonal Injury in Demyelinating DiseaseR01NS043174 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI SCHERER, STEVEN SIMON · 2002 to 2011
$3.1M
Genomic Studies in Charcot-Marie-Tooth DiseaseR01NS075764 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI SHY, MICHAEL E., ZUCHNER, STEPHAN · 2012 to 2016
$3.0M
TISSUE ENGINEERED HUMAN NEUROMUSCULAR JUNCTIONS FOR MODELING AXONAL NEUROPATHYR01NS094388 · NINDS · UNIVERSITY OF WASHINGTON · PI KIM, DEOK-HO · 2017 to 2021
$1.7M
Epigenetic Regulation of Peripheral Nerve MyelinationR01NS075269 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI SVAREN, JOHN P · 2011 to 2015
$1.5M
Medical Research Council G0601943NCATS NIH HHS KL2 TR002737NICHD NIH HHS U54 HD090256NINDS NIH HHS R01 NS043174NINDS NIH HHS R01 NS075269NINDS NIH HHS R01 NS075764NINDS NIH HHS R01 NS094388NINDS NIH HHS U54 NS065712
6 · The paper itself

Abstract

backgroundCharcot-Marie-Tooth disease type 1A (CMT1A) is caused by a uniform 1.5-Mb duplication on chromosome 17p, which includes the PMP22 gene. Patients often present the classic neuropathy phenotype, but also with high clinical variability.

objectiveWe aimed to identify genetic variants that are potentially associated with specific clinical outcomes in CMT1A.

methodsWe genotyped over 600,000 genomic markers using DNA samples from 971 CMT1A patients and performed a case-only genome-wide association study (GWAS) to identify potential genetic association in a subset of 644 individuals of European ancestry. A total of 14 clinical outcomes were analyzed in this study.

resultsThe analyses yielded suggestive association signals in four clinical outcomes: difficulty with eating utensils (lead SNP rs4713376, chr6 : 30773314, P = 9.91×10-7, odds ratio = 3.288), hearing loss (lead SNP rs7720606, chr5 : 126551732, P = 2.08×10-7, odds ratio = 3.439), decreased ability to feel (lead SNP rs17629990, chr4 : 171224046, P = 1.63×10-7, odds ratio = 0.336), and CMT neuropathy score (lead SNP rs12137595, chr1 : 4094068, P = 1.14×10-7, beta = 3.014).

conclusionsWhile the results require validation in future genetic and functional studies, the detected association signals may point to novel genetic modifiers in CMT1A.

Indexed as

Charcot-Marie-Tooth DiseaseGenes, ModifierGenome-Wide Association StudyGenotypeHumansCharcot-marie-tooth diseasetype 1a; genome-wide association study; modifier gene; single nucleotide polymorphism

Identifiers

PMID30958311
PMCPMC6597974

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.