Evidence map›Paper›PMID 30958186›Full record

ArticleJournal of the Royal Society, Interface2019

In vitro cell migration quantification method for scratch assays.

Ana Victoria Ponce Bobadilla, Jazmine Arévalo, Eduard Sarró, Helen M Byrne, Philip K Maini, Thomas Carraro, Simone Balocco, Anna Meseguer, Tomás Alarcón

Registry-linked trialAbstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06605365 (Ophthalmic Solution in Drye Eye Patients), which is not on this map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06605365 completednot on this mapstarted 2021, after this paper: background citation

Ophthalmic Solution in Drye Eye Patients

Typeobservational_patient_registrySponsorD&V FARMA srlRan2021 to 2022Enrolled20ConditionsDry Eye Disease (DED)ArmsCX-HA and CS
3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

  1. Trial
  2. Wound Healing Assay.Methods in molecular biology (Clifton, N.J.) · 2027
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  13. Enhancing Wound Healing with a Novel Alginate/Eggshell Membrane-Based Hydrogel Enriched with Red Ginseng Roots and Centella Asiatica.Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) · 2026
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ana Victoria Ponce Bobadilla1 Institute for Applied Mathematics, Heidelberg University , 69120 Heidelberg , Germany.
Jazmine Arévalo3 Renal Physiopathology Group, CIBBIM-Nanomedicine, Vall d'Hebron Research Institute , Barcelona , Spain.
Eduard Sarró3 Renal Physiopathology Group, CIBBIM-Nanomedicine, Vall d'Hebron Research Institute , Barcelona , Spain.
Helen M Byrne4 Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford , Oxford OX2 6GG , UK.
Philip K Maini4 Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford , Oxford OX2 6GG , UK.
Thomas Carraro1 Institute for Applied Mathematics, Heidelberg University , 69120 Heidelberg , Germany.
Simone Balocco5 Department of Mathematics and Informatics , University of Barcelona , Gran Via 585, 08007 Barcelona , Spain.
Anna Meseguer3 Renal Physiopathology Group, CIBBIM-Nanomedicine, Vall d'Hebron Research Institute , Barcelona , Spain.
Tomás Alarcón9 ICREA , Pg. Lluís Companys 23, 08010 Barcelona , Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The scratch assay is an in vitro technique used to assess the contribution of molecular and cellular mechanisms to cell migration. The assay can also be used to evaluate therapeutic compounds before clinical use. Current quantification methods of scratch assays deal poorly with irregular cell-free areas and crooked leading edges which are features typically present in the experimental data. We introduce a new migration quantification method, called 'monolayer edge velocimetry', that permits analysis of low-quality experimental data and better statistical classification of migration rates than standard quantification methods. The new method relies on quantifying the horizontal component of the cell monolayer velocity across the leading edge. By performing a classification test on in silico data, we show that the method exhibits significantly lower statistical errors than standard methods. When applied to in vitro data, our method outperforms standard methods by detecting differences in the migration rates between different cell groups that the other methods could not detect. Application of this new method will enable quantification of migration rates from in vitro scratch assay data that cannot be analysed using existing methods.

Indexed as

Cell MovementCell ProliferationComputer SimulationModels, BiologicalCell Line, TumorHumansmigration quantification methodsmigration ratesscratch assays

Identifiers

PMID30958186
PMCPMC6408363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.