Evidence map›Paper›PMID 30958112›Full record

ArticleOpen biology2019

Large-scale gene analysis of rabbit atherosclerosis to discover new biomarkers for coronary artery disease.

Xiaolan Yu, Wen Guan, Yang Zhang, Qing Deng, Jingjing Li, Hao Ye, Shaorong Deng, Wei Han, Yan Yu

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Xiaolan Yu1 Shanghai Municipality Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology, Shanghai Jiao Tong University , Shanghai , People's Republic of China.
Wen Guan3 Department of Biochemistry, Zhongshan School of Medicine, Sun Yat-sen University , GuangZhou , People's Republic of China.
Yang Zhang1 Shanghai Municipality Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology, Shanghai Jiao Tong University , Shanghai , People's Republic of China.
Qing Deng1 Shanghai Municipality Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology, Shanghai Jiao Tong University , Shanghai , People's Republic of China.
Jingjing Li2 Laboratory of Regeneromics, School of Pharmacy, Shanghai Jiao Tong University , Shanghai , People's Republic of China.
Hao Ye2 Laboratory of Regeneromics, School of Pharmacy, Shanghai Jiao Tong University , Shanghai , People's Republic of China.
Shaorong Deng2 Laboratory of Regeneromics, School of Pharmacy, Shanghai Jiao Tong University , Shanghai , People's Republic of China.
Wei Han2 Laboratory of Regeneromics, School of Pharmacy, Shanghai Jiao Tong University , Shanghai , People's Republic of China.
Yan Yu1 Shanghai Municipality Key Laboratory of Veterinary Biotechnology, School of Agriculture and Biology, Shanghai Jiao Tong University , Shanghai , People's Republic of China.
Shanghai Jiao Tong University · CNSun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Atherosclerosis is the pathological basis of coronary artery disease (CAD) and causes high mortality. Thus, early detection is thought to be crucial in reducing the risk of CAD. Uncovering the mechanisms of the progression and regression of atherosclerosis will provide insights into discovering novel biomarkers to identify subjects at risk for CAD and improve prevention. We established atherosclerosis progression and regression in a rabbit model. Then, we extracted mRNA of the abdominal aorta from control, model and recovery groups to perform gene chip analysis. Candidate biomarkers were screened by large-scale gene analysis and validated in patients with CAD or with CAD recovery by ELISA. The differentially expressed genes in the progression and regression of atherosclerosis were mainly enriched in four clusters. Genes associated with inflammation and extracellular matrix were returned to normal or close-to-normal levels much earlier than genes associated with metabolism and sarcoplasmic proliferation, and they were maintained downregulated or upregulated after feeding a normal diet. We then selected four candidate biomarkers and found that lipoprotein lipase (LPL), bone morphogenetic protein 7 and somatostatin concentrations could indicate CAD diagnosis. In addition, LPL and macrophage cationic peptide 2 can be indicators of the prognosis of CAD. Molecular changes during the progression and regression of atherosclerosis in rabbits were revealed, and candidate regulators were identified. The identified factors could be used as novel biomarkers and targets for improving the diagnosis and prognosis of human CAD in the future.

Indexed as

Disease Models, AnimalAdultAgedAnimalsAtherosclerosisBiomarkersCoronary Artery DiseaseDisease ProgressionGene Expression ProfilingGene OntologyHumansLipidsLipoprotein LipaseMaleMiddle AgedBiomarkersLipidsLipoprotein Lipaseatherosclerosisbiomarkerscoronary artery diseasegene chipNew Zealand white rabbitsregression

Identifiers

PMID30958112
PMCPMC6367139
OpenAlexW2913027285

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.