Evidence map›Paper›PMID 30957856›Full record

ArticleNucleic acids research2019

Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis.

Daniel R Reuß, Patrick Faßhauer, Philipp Joel Mroch, Inam Ul-Haq, Byoung-Mo Koo, Anja Pöhlein, Carol A Gross, Rolf Daniel, Sabine Brantl, Jörg Stülke

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
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  6. Review
  7. Control of asparagine homeostasis inJournal of bacteriology · 2024
    Article
  8. Recent Development of DNA Gyrase Inhibitors: An Update.Mini reviews in medicinal chemistry · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Daniel R ReußDepartment of General Microbiology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Patrick FaßhauerDepartment of General Microbiology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Philipp Joel MrochDepartment of General Microbiology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Inam Ul-HaqMatthias-Schleiden-Institut, AG Bakteriengenetik, Friedrich-Schiller-University Jena, Jena, Germany.
Byoung-Mo KooDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94158, USA.
Anja PöhleinDepartment of Genomic and Applied Microbiology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Carol A GrossDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94158, USA.
Rolf DanielDepartment of Genomic and Applied Microbiology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
Sabine BrantlMatthias-Schleiden-Institut, AG Bakteriengenetik, Friedrich-Schiller-University Jena, Jena, Germany.
Jörg StülkeDepartment of General Microbiology, GZMB, Georg-August-University Göttingen, Göttingen, Germany.
University of Göttingen · DEFriedrich Schiller University Jena · DEUniversity of California, San Francisco · US

Funding

Cellular homeostasis pathways in bacteriaR35GM118061 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GROSS, CAROL ANNE · 2016 to 2025
$9.0M
NIGMS NIH HHS R35 GM118061
6 · The paper itself

Abstract

DNA topoisomerases play essential roles in chromosome organization and replication. Most bacteria possess multiple topoisomerases which have specialized functions in the control of DNA supercoiling or in DNA catenation/decatenation during recombination and chromosome segregation. DNA topoisomerase I is required for the relaxation of negatively supercoiled DNA behind the transcribing RNA polymerase. Conflicting results have been reported on the essentiality of the topA gene encoding topoisomerase I in the model bacterium Bacillus subtilis. In this work, we have studied the requirement for topoisomerase I in B. subtilis. All stable topA mutants carried different chromosomal amplifications of the genomic region encompassing the parEC operon encoding topoisomerase IV. Using a fluorescent amplification reporter system we observed that each individual topA mutant had acquired such an amplification. Eventually, the amplifications were replaced by a point mutation in the parEC promoter region which resulted in a fivefold increase of parEC expression. In this strain both type I topoisomerases, encoded by topA and topB, were dispensable. Our results demonstrate that topoisomerase IV at increased expression is necessary and sufficient to take over the function of type 1A topoisomerases.

Indexed as

Bacillus subtilisBacterial ProteinsChromosomes, BacterialDNA, BacterialDNA-Directed RNA PolymerasesDNA ReplicationDNA, SuperhelicalDNA Topoisomerase IVDNA Topoisomerases, Type IEscherichia coliEscherichia coli ProteinsGenome, BacterialMutationPhenotypePoint MutationPromoter Regions, GeneticBacterial ProteinsDNA, BacterialDNA-Directed RNA PolymerasesDNA, SuperhelicalDNA Topoisomerase IVDNA Topoisomerases, Type IEscherichia coli Proteins

Identifiers

PMID30957856
PMCPMC6547408
OpenAlexW2940102098

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.