Evidence map›Paper›PMID 30957015›Full record

ArticleeNeuro

Brain Region-Specific Gene Signatures Revealed by Distinct Astrocyte Subpopulations Unveil Links to Glioma and Neurodegenerative Diseases.

Raquel Cuevas-Diaz Duran, Chih-Yen Wang, Hui Zheng, Benjamin Deneen, Jia Qian Wu

Open access · goldAbstract read
In one paragraph

Article in eNeuro. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 4 countries.

Raquel Cuevas-Diaz DuranThe Vivian L. Smith Department of Neurosurgery, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas 77030.
Chih-Yen WangDepartment of Life Sciences, National Cheng Kung University, Tainan City 70101, Taiwan.
Hui ZhengHuffington Center on Aging.
Benjamin DeneenCenter for Cell and Gene Therapy.
Jia Qian WuThe Vivian L. Smith Department of Neurosurgery, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas 77030.ORCID 0000-0002-6938-6648
Brown Foundation · USBaylor College of Medicine · USNational Cheng Kung University · TWNational Student Clearinghouse Research Center · US

Funding

Transcriptional regulation of gliogenesis in the CNSR01NS071153 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI DENEEN, BENJAMIN · 2010 to 2022
$5.0M
Identifying Novel Molecular Targets for Chronic SCIR01NS088353 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI JIaqian Wu-Huber · 2015 to 2026
$4.0M
Decoding the role of diverse astrocyte populations in aging and ADRF1AG054111 · NIA · BAYLOR COLLEGE OF MEDICINE · PI DENEEN, BENJAMIN, ZHENG, HUI · 2016 to 2016
$3.1M
Delineating the Heterogeneity of Reactive Astrocytes in Spinal Cord InjuryR21NS113068 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI WU-HUBER, JIAQIAN · 2020 to 2020
$428k
The role of circadian clocks in photoreceptor cell development, maintenance and functionR21EY028647 · NEI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI RIBELAYGA, CHRISTOPHE P., WU-HUBER, JIAQIAN · 2018 to 2019
$424k
NEI NIH HHS R21 EY028647NIA NIH HHS RF1 AG054111NINDS NIH HHS R01 NS071153NINDS NIH HHS R01 NS088353NINDS NIH HHS R21 NS113068
6 · The paper itself

Abstract

Currently, there are no effective treatments for glioma or for neurodegenerative diseases because of, in part, our limited understanding of the pathophysiology and cellular heterogeneity of these diseases. Mounting evidence suggests that astrocytes play an active role in the pathogenesis of these diseases by contributing to a diverse range of pathophysiological states. In a previous study, five molecularly distinct astrocyte subpopulations from three different brain regions were identified. To further delineate the underlying diversity of these populations, we obtained mouse brain region-specific gene signatures for both protein-coding and long non-coding RNA and found that these astrocyte subpopulations are endowed with unique molecular signatures across diverse brain regions. Additional gene set and single-sample enrichment analyses revealed that gene signatures of different subpopulations are differentially correlated with glioma tumors that harbor distinct genomic alterations. To the best of our knowledge, this is the first study that links transcriptional profiles of astrocyte subpopulations with glioma genomic mutations. Furthermore, our results demonstrated that subpopulations of astrocytes in select brain regions are associated with specific neurodegenerative diseases. Overall, the present study provides a new perspective for understanding the pathophysiology of glioma and neurodegenerative diseases and highlights the potential contributions of diverse astrocyte populations to normal, malignant, and degenerative brain functions.

Indexed as

AstrocytesGliomaNeurodegenerative DiseasesTranscriptomeAnimalsFemaleHumansMaleMiceMutationastrocyte subpopulationsgene set variation analysisgene signaturesgenomic alterationsgliomaneurodegenerative disorders

Identifiers

PMID30957015
PMCPMC6449165
OpenAlexW2921894648

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.