Evidence map›Paper›PMID 30954575›Full record

ArticleJournal of molecular biology2019

Cryo-EM Analysis Reveals Structural Basis of Helicobacter pylori VacA Toxin Oligomerization.

Min Su, Amanda L Erwin, Anne M Campbell, Tasia M Pyburn, Lauren E Salay, Jessica L Hanks, D Borden Lacy, David L Akey, Timothy L Cover, Melanie D Ohi

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Biomolecules · 2026
    Review
  3. Article
  4. Taurine modulates host cell responses toInfection and immunity · 2024
    Article
  5. Article
  6. Review
  7. Clinical Pathogenesis, Molecular Mechanisms of Gastric Cancer Development.Current topics in microbiology and immunology · 2023
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Function of Non-coding RNA inFrontiers in molecular biosciences · 2021
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Min SuLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
Amanda L ErwinLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA; Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.
Anne M CampbellDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37212, USA.
Tasia M PyburnDepartment of Cell and Developmental Biology, Vanderbilt University, Nashville, TN 37212, USA.
Lauren E SalayDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37212, USA.
Jessica L HanksLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
D Borden LacyDepartment of Pathology, Microbiology, and Immunology, Vanderbilt University School of Medicine, Nashville, TN 37212, USA; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN 37212, USA.
David L AkeyLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA.
Timothy L CoverDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37212, USA; Department of Pathology, Microbiology, and Immunology, Vanderbilt University School of Medicine, Nashville, TN 37212, USA; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN 37212, USA. Electronic address: timothy.l.cover@vanderbilt.edu.
Melanie D OhiLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA; Department of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA. Electronic address: mohi@umich.edu.
University of Michigan–Ann Arbor · USVanderbilt University · USVA Tennessee Valley Healthcare System · US

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Role of Iron and B-Catenin Activation in Gastric CarcinogenesisP01CA116087 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2009 to 2026
$27.5M
Structure-function analysis of H. pylori VacAR01AI039657 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI TIMOTHY L COVER · 1996 to 2026
$8.3M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
Integrated Biological Systems Training in OncologyT32CA119925 · NCI · VANDERBILT UNIVERSITY · PI Vivian Gama, William Patrick Tansey · 2008 to 2026
$7.6M
Structural Biology of Multi-Domain Proteins and Multi-Protein Machinery in DNA Replication and RepairR35GM118089 · NIGMS · VANDERBILT UNIVERSITY · PI WALTER J. CHAZIN · 2016 to 2026
$4.9M
Silicon Mechanics Compute ClusterS10OD020011 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SKINIOTIS, GEORGIOS · 2015 to 2015
$490k
Understanding the molecular mechanisms of H. pylori VacA pore-formationF31AI112324 · NIAID · VANDERBILT UNIVERSITY · PI PYBURN, TASIA · 2014 to 2016
$83k
"Pathogenesis of Helicobacter pylori Infection"I01BX004447 · VA · VETERANS HEALTH ADMINISTRATION · PI TIMOTHY L COVER · 2019 to 2026
–
BLRD VA I01 BX004447NCI NIH HHS P01 CA116087NCI NIH HHS T32 CA119925NIAID NIH HHS F31 AI112324NIAID NIH HHS R01 AI039657NIDDK NIH HHS P30 DK058404NIGMS NIH HHS R35 GM118089NIGMS NIH HHS T32 GM008320NIH HHS S10 OD020011
6 · The paper itself

Abstract

Helicobacter pylori colonizes the human stomach and contributes to the development of gastric cancer and peptic ulcer disease. H. pylori secretes a pore-forming toxin called vacuolating cytotoxin A (VacA), which contains two domains (p33 and p55) and assembles into oligomeric structures. Using single-particle cryo-electron microscopy, we have determined low-resolution structures of a VacA dodecamer and heptamer, as well as a 3.8-Å structure of the VacA hexamer. These analyses show that VacA p88 consists predominantly of a right-handed beta-helix that extends from the p55 domain into the p33 domain. We map the regions of p33 and p55 involved in hexamer assembly, model how interactions between protomers support heptamer formation, and identify surfaces of VacA that likely contact membrane. This work provides structural insights into the process of VacA oligomerization and identifies regions of VacA protomers that are predicted to contact the host cell surface during channel formation.

Indexed as

Bacterial ProteinsCryoelectron MicroscopyHelicobacter InfectionsHelicobacter pyloriHumansModels, MolecularProtein ConformationProtein MultimerizationBacterial ProteinsVacA protein, Helicobacter pylorigastric cancerpore-forming toxinssingle-particle cryo-EM

Identifiers

PMID30954575
PMCPMC6625667
OpenAlexW2928573296

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.