Evidence map›Paper›PMID 30954477›Full record

ArticleCell systems2019

iSeq 2.0: A Modular and Interchangeable Toolkit for Interaction Screening in Yeast.

Xianan Liu, Zhimin Liu, Adam K Dziulko, Fangfei Li, Darach Miller, Robert D Morabito, Danielle Francois, Sasha F Levy

Abstract read
In one paragraph

Article in Cell systems, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xianan LiuDepartment of Biochemistry, Stony Brook University, Stony Brook, NY 11794-5215, USA; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794-5252, USA.
Zhimin LiuDepartment of Biochemistry, Stony Brook University, Stony Brook, NY 11794-5215, USA; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794-5252, USA.
Adam K DziulkoDepartment of Biochemistry, Stony Brook University, Stony Brook, NY 11794-5215, USA; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794-5252, USA.
Fangfei LiLaufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794-5252, USA; Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY 11794-5215, USA.
Darach MillerSLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA; Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA.
Robert D MorabitoDepartment of Biochemistry, Stony Brook University, Stony Brook, NY 11794-5215, USA; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794-5252, USA.
Danielle FrancoisDepartment of Biochemistry, Stony Brook University, Stony Brook, NY 11794-5215, USA; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794-5252, USA.
Sasha F LevyDepartment of Biochemistry, Stony Brook University, Stony Brook, NY 11794-5215, USA; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, NY 11794-5252, USA; Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY 11794-5215, USA; Joint Initiative for Metrology in Biology, Stanford, CA 94305-4245, USA; SLAC National Accelerator Laboratory, Menlo Park, CA 94025, USA; Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA. Electronic address: sflevy@stanford.edu.

Funding

Establishing a Long Island Bioscience HubU01HL127522 · NHLBI · STATE UNIVERSITY NEW YORK STONY BROOK · PI RUBIN, CLINTON T · 2015 to 2017
$3.0M
PPiSeq: High-Throughput Protein-Protein Interaction SequencingR01HG008354 · NHGRI · STATE UNIVERSITY NEW YORK STONY BROOK · PI LEVY, SASHA F · 2015 to 2018
$1.5M
NHGRI NIH HHS R01 HG008354NHLBI NIH HHS U01 HL127522
6 · The paper itself

Abstract

We developed a flexible toolkit for combinatorial screening in Saccharomyces cerevisiae, which generates large libraries of cells, each uniquely barcoded to mark a combination of DNA elements. This interaction sequencing platform (iSeq 2.0) includes genomic landing pads that assemble combinations through sequential integration of plasmids or yeast mating, 15 barcoded plasmid libraries containing split selectable markers (URA3

Indexed as

SoftwareFungal ProteinsGene LibraryProtein Interaction MappingRecombinant ProteinsSaccharomyces cerevisiaeSequence Analysis, DNAFungal ProteinsRecombinant Proteinscombinatorial screeningCrefitnessinteraction screeningiSeqlanding padloxPSaccharomyces cerevisiae, barcode sequencingyeast

Identifiers

PMID30954477
PMCPMC6483859

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.