Evidence map›Paper›PMID 30954076›Full record

ArticleBiological research2019

Molecular cloning and subcellular localization of six HDACs and their roles in response to salt and drought stress in kenaf (Hibiscus cannabinus L.).

Fan Wei, Danfeng Tang, Zengqiang Li, Muhammad Haneef Kashif, Aziz Khan, Hai Lu, Ruixing Jia, Peng Chen

Open access · goldAbstract read
In one paragraph

Article in Biological research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
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  9. Insights into the Epigenetic Basis of Plant Salt Tolerance.International journal of molecular sciences · 2024
    Review
  10. Article
  11. Genome-wide identification of bHLH transcription factors in Kenaf (Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Plants (Basel, Switzerland) · 2023
    Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Fan WeiKey Laboratory of Plant Genetics and Breeding, College of Agriculture, Guangxi University, Nanning, 530005, People's Republic of China.
Danfeng TangKey Laboratory of Plant Genetics and Breeding, College of Agriculture, Guangxi University, Nanning, 530005, People's Republic of China.
Zengqiang LiKey Laboratory of Plant Genetics and Breeding, College of Agriculture, Guangxi University, Nanning, 530005, People's Republic of China.
Muhammad Haneef KashifKey Laboratory of Plant Genetics and Breeding, College of Agriculture, Guangxi University, Nanning, 530005, People's Republic of China.
Aziz KhanKey Laboratory of Plant Genetics and Breeding, College of Agriculture, Guangxi University, Nanning, 530005, People's Republic of China.
Hai LuKey Laboratory of Plant Genetics and Breeding, College of Agriculture, Guangxi University, Nanning, 530005, People's Republic of China.
Ruixing JiaKey Laboratory of Plant Genetics and Breeding, College of Agriculture, Guangxi University, Nanning, 530005, People's Republic of China.
Peng ChenKey Laboratory of Plant Genetics and Breeding, College of Agriculture, Guangxi University, Nanning, 530005, People's Republic of China. chenmanuscript@163.com.
Guangxi University · CNGuangxi Medicinal Botanical Garden · CN

Funding

Earmarked Fund for Modern Agro-industry Technology Research System CARS-16-E14National Natural Science Foundation of China 31560341
6 · The paper itself

Abstract

backgroundHistone acetylation is an important epigenetic modification that regulates gene activity in response to stress. Histone acetylation levels are reversibly regulated by histone acetyltransferases (HATs) and histone deacetylases (HDACs). The imperative roles of HDACs in gene transcription, transcriptional regulation, growth and responses to stressful environment have been widely investigated in Arabidopsis. However, data regarding HDACs in kenaf crop has not been disclosed yet.

resultsIn this study, six HDACs genes (HcHDA2, HcHDA6, HcHDA8, HcHDA9, HcHDA19, and HcSRT2) were isolated and characterized. Phylogenetic tree revealed that these HcHDACs shared high degree of sequence homology with those of Gossypium arboreum. Subcellular localization analysis showed that GFP-tagged HcHDA2 and HcHDA8 were predominantly localized in the nucleus, HcHDA6 and HcHDA19 in nucleus and cytosol. The HcHDA9 was found in both nucleus and plasma membranes. Real-time quantitative PCR showed that the six HcHDACs genes were expressed with distinct expression patterns across plant tissues. Furthermore, we determined differential accumulation of HcHDACs transcripts under salt and drought treatments, indicating that these enzymes may participate in the biological process under stress in kenaf. Finally, we showed that the levels of histone H3 and H4 acetylation were modulated by salt and drought stress in kenaf.

conclusionsWe have isolated and characterized six HDACs genes from kenaf. These data showed that HDACs are imperative players for growth and development as well abiotic stress responses in kenaf.

Indexed as

DroughtsCloning, MolecularHibiscusHistone AcetyltransferasesHistone DeacetylasesReal-Time Polymerase Chain ReactionStress, PhysiologicalTranscriptional ActivationHistone AcetyltransferasesHistone DeacetylasesGene expressionHistone acetylationHistone deacetylasesKenaf (Hibiscus cannabinus L.)StressSubcellular localization

Identifiers

PMID30954076
PMCPMC6451785
OpenAlexW2942228408

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.