Evidence map›Paper›PMID 30953471›Full record

ArticleBMC genomics2019

Comparative genomics reveals a lack of evidence for pigeons as a main source of stx

Angela H A M van Hoek, Janieke N J van Veldhuizen, Ingrid Friesema, Claudia Coipan, John W A Rossen, Indra L Bergval, Eelco Franz

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  4. Cross-sectoral genomic surveillance reveals a lack of insight in sources of human infections with Shiga toxin-producingEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2024
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  5. Intestinal Carriage of Two DistinctPathogens (Basel, Switzerland) · 2024
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  11. Whole-Genome Sequencing Analysis of aDiagnostics (Basel, Switzerland) · 2021
    Article
  12. Virulence Factors of Enteric PathogenicInternational journal of molecular sciences · 2021
    Review
  13. Article
  14. Article
  15. Genomic epidemiology of emerging ESBL-producingEmerging microbes & infections · 2020
    Article
  16. Snapshot Study of Whole Genome Sequences ofAntibiotics (Basel, Switzerland) · 2020
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Angela H A M van HoekCentre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands. angela.van.hoek@rivm.nl.ORCID http://orcid.org/0000-0003-1626-0600
Janieke N J van VeldhuizenCentre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands.
Ingrid FriesemaCentre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands.
Claudia CoipanCentre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands.
John W A RossenDepartment of Medical Microbiology and Infection Prevention, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.
Indra L BergvalCentre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands.
Eelco FranzCentre for Infectious Disease Control (CIb), National Institute for Public Health and the Environment (RIVM), Bilthoven, the Netherlands.
National Institute for Public Health and the Environment · NLUniversity Medical Center Groningen · NL

Funding

Interreg VA 202085NVWA V/092429/17
6 · The paper itself

Abstract

backgroundWild birds, in particular pigeons are considered a natural reservoir for stx

resultsSerotypes and sequence types of stx

conclusionsComparative genomics revealed that isolates from mild human disease are dominated by serotypes not encountered in the pigeon reservoir. It is therefore unlikely that zoonotic transmission from this reservoir plays an important role in the contribution to the majority of human disease associated with stx

Indexed as

AnimalsBird DiseasesColumbidaeEnteropathogenic Escherichia coliEscherichia coli InfectionsEscherichia coli ProteinsGenome, BacterialGenomicsHumansPhylogenyShiga ToxinVirulence FactorsEscherichia coli ProteinsShiga ToxinVirulence FactorsClonal lineagesComparative genomicsHumanHybrid pathotypesPathogensPigeonReservoirSTECStx2ftEPEC

Identifiers

PMID30953471
PMCPMC6451237
OpenAlexW2937486726

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.