Evidence map›Paper›PMID 30953423›Full record

ArticleBirth defects research2019

Association of IFT88 gene variants with nonsyndromic cleft lip with or without cleft palate.

Amanda Barba, Christian Urbina, Lorena Maili, Matthew R Greives, Steven J Blackwell, John B Mulliken, Brett Chiquet, Susan H Blanton, Jacqueline T Hecht, Ariadne Letra

Abstract read
In one paragraph

Article in Birth defects research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Ciliary and Non-Ciliary Roles of IFT88 in Development and Diseases.International journal of molecular sciences · 2025
    Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Amanda BarbaCenter for Craniofacial Research, School of Dentistry, University of Texas Health Science Center at Houston, Houston, Texas.
Christian UrbinaDepartment of Pediatrics, Pediatrics Research Center, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas.
Lorena MailiDepartment of Pediatrics, Pediatrics Research Center, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas.
Matthew R GreivesDepartment of Pediatric Surgery, McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas.
Steven J BlackwellDepartment of Plastic Surgery, Shriners Hospital for Children, Houston, Texas.
John B MullikenDepartment of Plastic and Oral Surgery, Boston Children's Hospital, Boston, Massachusetts.
Brett ChiquetCenter for Craniofacial Research, School of Dentistry, University of Texas Health Science Center at Houston, Houston, Texas.
Susan H BlantonDepartment of Human Genetics and John P. Hussman Institute of Human Genomics, University of Miami Miller School of Medicine, Miami, Florida.
Jacqueline T HechtCenter for Craniofacial Research, School of Dentistry, University of Texas Health Science Center at Houston, Houston, Texas.
Ariadne LetraCenter for Craniofacial Research, School of Dentistry, University of Texas Health Science Center at Houston, Houston, Texas.ORCID 0000-0002-7197-6735

Funding

MOLECULAR STUDIES IN NONSYNDROMIC CLEFT LIP AND PALATER01DE011931 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BLANTON, SUSAN HALLORAN, HECHT, JACQUELINE T · 1999 to 2017
$7.6M
NIDCR NIH HHS R01 DE011931
6 · The paper itself

Abstract

backgroundNonsyndromic cleft lip with or without cleft palate (NSCLP) is a common birth defect with multifactorial etiology. Genetic studies have identified numerous gene variants in association with NSCLP. IFT88 (intraflagellar transport 88) has been suggested to play a major role in craniofacial development, as Ift88 mutant mice exhibit cleft palate and mutations in IFT88 were identified in individuals with NSCLP.

objectiveTo investigate the association of IFT88 single nucleotide gene variants (SNVs) with NSCLP in a large family data set consisting of non-Hispanic white (NHW) and Hispanic families.

methodsNine SNVs in/nearby IFT88 were genotyped in 482 NHW families and 301 Hispanic NSCLP families. Genotyping was performed using TaqMan® chemistry. Single- and pairwise-SNV association analyses were performed for all families stratified by ethnicity and family history of NSCLP using the family-based association test (FBAT), and association in the presence of linkage (APL). Bonferroni correction was used to adjust for multiple testing and p values ≤.0055 were considered statistically significant.

resultsSignificant association was found between IFT88 rs9509311 and rs2497490 and NSCLP in NHW all families (p = .004 and .005, respectively), while nominal associations were found for rs7998361 and rs9509307 (p < .05). Pairwise association analyses also showed nominal associations between NSCLP in both NHW and Hispanic data sets (p < .05). No association was found between individual variants in IFT88 and NSCLP in Hispanics.

conclusionsOur results suggest that variation in IFT88 may contribute to NSCLP risk, particularly in multiplex families from a non-Hispanic white population.

Indexed as

Cleft LipCleft PalateEthnicityGenetic Predisposition to DiseaseGenotypeHispanic or LatinoHumansPolymorphism, Single NucleotideTumor Suppressor ProteinsWhite PeopleIFT88 protein, humanTumor Suppressor Proteinsassociationcleft lip/palategeneIFT88nonsyndromic

Identifiers

PMID30953423
PMCPMC7227388

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.