Evidence map›Paper›PMID 30951792›Full record

ArticleVirus research2019

Mouse mammary tumor viral env sequences are not present in the human genome but are present in breast tumors and normal breast tissues.

Steven Lehrer, Peter H Rheinstein

Open access · greenAbstract read
In one paragraph

Article in Virus research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Interrelated Oncogenic Viruses and Breast Cancer.Frontiers in molecular biosciences · 2022
    Review
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  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Steven LehrerDepartment of Radiation Oncolog, Icahn School of Medicine at Mount Sinai, New York, United States. Electronic address: steven.lehrer@mssm.edu.
Peter H RheinsteinSevern Health Solutions, Severna Park, MD, United States.
Icahn School of Medicine at Mount Sinai · US

Funding

POLYMORPHIC ESTROGEN RECEPTOR M-RNA IN BREAST CANCERR01CA049506 · NCI · MOUNT SINAI SCHOOL OF MEDICINE OF CUNY · PI LEHRER, STEVEN P · 1989 to 1991
–
NCI NIH HHS R01 CA049506
6 · The paper itself

Abstract

In 1936, John Joseph Bittner identified mouse mammary tumor virus (MMTV), a milk transmitted beta retrovirus, a form of single-stranded positive-sense RNA virus. A retrovirus inserts a copy of its genome into the DNA of a host cell, thus altering the cell's genome. In the current analysis, we searched for MMTV sequences within the human genome. To compare the MMTV genome to the human genome, we used BLAT, the Blast-Like Alignment Tool of the UCSC Genome Browser. BLAT can align a user sequence of 25 bases or more to the genome. 60 MMTV sequences were in the human genome. Of 56 sequences from the MMTV POL gene, 36 POL sequences were from the same part of the gene, beginning at viral nucleotide 4800 but of different lengths. 8 viral sequences began at nucleotide ∼3430 of the POL gene. Four viral sequences were from GAGdUTPase, encoded by the MMTV PRO gene. Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) is an enzyme present in several major retroviral families. In MMTV dUTPase may be essential for viral replication. Since BLAT identified no MMTV envelope (env) sequence in the human genome, the env sequences from breast tumors and normal breast tissue found in other studies may have come from an MMTV infection. However, no one is certain how MMTV could enter human cells, since the cells do not have a cellular receptor for MMTV, as do mouse cells.

Indexed as

Base SequenceBreastBreast NeoplasmsDatabases, GeneticFemaleGenes, envGenes, polGenome, HumanHumansMammary Tumor Virus, MousePyrophosphatasesSequence AlignmentSequence Homology, Nucleic AcidSoftwaredUTP pyrophosphatasePyrophosphatasesBreast cancerMouse mammary tumor virusThe Cancer Genome AtlasThe UCSC Genome Browser

Identifiers

PMID30951792
PMCPMC6510484
OpenAlexW2931171301

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.