ArticleThe plant genome2019
An Integrated Genotyping-by-Sequencing Polymorphism Map for Over 10,000 Sorghum Genotypes.
Article in The plant genome, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed.
- Decoupling the chemical and physical origins of the seed spectral manifold in sorghum.NPJ systems biology and applications · 2026Article
- Population Genomic Structure of Sorghum Landraces Across Landscape, Environment and Culture.Molecular ecology · 2026Article
- A machine learning approach to genome-wide association mapping of disease resistance and geographic origin in sorghum.BMC plant biology · 2026Article
- Candidate genes for anthracnose resistance in Senegalese sorghum: a machine learning-based exploration.Functional & integrative genomics · 2025Article
- Population genomic structure of sorghum landraces across landscape, environment and culture.bioRxiv : the preprint server for biology · 2025Article
- MINE: maximally informative next experiment-toward a new GWAS experimental design and methodology.G3 (Bethesda, Md.) · 2025Article
- Maladaptation in cereal crop landraces following a soot-producing climate catastrophe.Nature communications · 2025Article
- Mining sorghum pangenome enabled identification of new dw3 alleles for breeding stable-dwarfing hybrids.G3 (Bethesda, Md.) · 2025Article
- MINE: a new way to design genetics experiments for discovery.Briefings in bioinformatics · 2025Article
- Genome-wide association study and haplotype analyses reveal the genetic architecture of agronomic traits and sugars in sweet sorghum.Frontiers in genetics · 2025Article
- Grain yellowness is an effective predictor of carotenoid content in global sorghum populations.Scientific reports · 2024Article
- Genome-Wide Association Analysis Uncovers Genes Associated with Resistance to Head Smut Pathotype 5 in Senegalese Sorghum Accessions.Plants (Basel, Switzerland) · 2024Article
- Major impacts of widespread structural variation on sorghum.Genome research · 2024Article
- Identification of genetic and environmental factors influencing aerial root traits that support biological nitrogen fixation in sorghum.G3 (Bethesda, Md.) · 2024Article
- Identification of pleiotropic loci mediating structural and non-structural carbohydrate accumulation within the sorghum bioenergy association panel using high-throughput markers.Frontiers in plant science · 2024Article
- Pilot-scale genome-wide association mapping in diverse sorghum germplasms identified novel genetic loci linked to major agronomic, root and stomatal traits.Scientific reports · 2023Article
- Genome-wide association analysis identified molecular markers and candidate genes for flower traits in Chinese orchid (Horticulture research · 2023Article
- Harnessing the Genetic Basis of Sorghum Biomass-Related Traits to Facilitate Bioenergy Applications.International journal of molecular sciences · 2023Article
- Genomics and phenomics enabled prebreeding improved early-season chilling tolerance in Sorghum.G3 (Bethesda, Md.) · 2023Article
- Genome-Wide Association Study of Seed Morphology Traits in Senegalese Sorghum Cultivars.Plants (Basel, Switzerland) · 2023Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Mining crop genomic variation can facilitate the genetic research of complex traits and molecular breeding. In sorghum [ L. (Moench)], several large-scale single nucleotide polymorphism (SNP) datasets have been generated using genotyping-by-sequencing of KI reduced representation libraries. However, data reuse has been impeded by differences in reference genome coordinates among datasets. To facilitate reuse of these data, we constructed and characterized an integrated 459,304-SNP dataset for 10,323 sorghum genotypes on the version 3.1 reference genome. The SNP distribution showed high enrichment in subtelomeric chromosome arms and in genic regions (48% of SNPs) and was highly correlated ( = 0.82) to the distribution of KI restriction sites. The genetic structure reflected population differences by botanical race, as well as familial structure among recombinant inbred lines (RILs). Faster linkage disequilibrium decay was observed in the diversity panel than in the RILs, as expected, given the greater opportunity for recombination in diverse populations. To validate the quality and utility of the integrated SNP dataset, we used genome-wide association studies (GWAS) of genebank phenotype data, precisely mapping several known genes (e.g and ) and identifying novel associations for other traits. We further validated the dataset with GWAS of new and published plant height and flowering time data in a nested association mapping population, precisely mapping known genes and identifying epistatic interactions underlying both traits. These findings validate this integrated SNP dataset as a useful genomics resource for sorghum genetics and breeding.
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