Evidence map›Paper›PMID 30949702›Full record

ArticleNucleic acids research2019

A unique exonuclease ExoG cleaves between RNA and DNA in mitochondrial DNA replication.

Chyuan-Chuan Wu, Jason L J Lin, Hsin-Fang Yang-Yen, Hanna S Yuan

Abstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  5. Article
  6. Article
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  9. Review
  10. Mitochondrial DNA Repair in Neurodegenerative Diseases and Ageing.International journal of molecular sciences · 2022
    Review
  11. Article
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  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Chyuan-Chuan WuInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan 11529, ROC.
Jason L J LinInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan 11529, ROC.
Hsin-Fang Yang-YenInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan 11529, ROC.
Hanna S YuanInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan 11529, ROC.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Replication of sufficient mitochondrial DNA (mtDNA) is essential for maintaining mitochondrial functions in mammalian cells. During mtDNA replication, RNA primers must be removed before the nascent circular DNA strands rejoin. This process involves mitochondrial RNase H1, which removes most of the RNA primers but leaves two ribonucleotides attached to the 5' end of nascent DNA. A subsequent 5'-exonuclease is required to remove the residual ribonucleotides, however, it remains unknown if any mitochondrial 5'-exonuclease could remove two RNA nucleotides from a hybrid duplex DNA. Here, we report that human mitochondrial Exonuclease G (ExoG) may participate in this particular process by efficiently cleaving at RNA-DNA junctions to remove the 5'-end RNA dinucleotide in an RNA/DNA hybrid duplex. Crystal structures of human ExoG bound respectively with DNA, RNA/DNA hybrid and RNA-DNA chimeric duplexes uncover the underlying structural mechanism of how ExoG specifically recognizes and cleaves at RNA-DNA junctions of a hybrid duplex with an A-form conformation. This study hence establishes the molecular basis of ExoG functioning as a unique 5'-exonuclease to mediate the flap-independent RNA primer removal process during mtDNA replication to maintain mitochondrial genome integrity.

Indexed as

DNA ReplicationBinding SitesCrystallography, X-RayDNA, MitochondrialEndonucleasesExonucleasesHumansMitochondriaNucleotidesProtein BindingProtein ConformationProtein DomainsRibonuclease HRibonucleotidesRNADNA, MitochondrialEndonucleasesEXOG protein, humanExonucleasesNucleotidesRibonuclease Hribonuclease HIRibonucleotidesRNARNA primers

Identifiers

PMID30949702
PMCPMC6547421

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.