Evidence map›Paper›PMID 30949527›Full record

ArticleOpen forum infectious diseases2019

Identification of 19 Novel Hepatitis C Virus Subtypes-Further Expanding HCV Classification.

Charlotte Hedskog, Bandita Parhy, Silvia Chang, Stefan Zeuzem, Christophe Moreno, Stephen D Shafran, Sergio M Borgia, Tarik Asselah, Laurent Alric, Armand Abergel and 7 more

Abstract read
In one paragraph

Article in Open forum infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Reinfection and Resistance Associated Substitutions Following a Minimal Monitoring Approach for Hepatitis C Virus Treatment in MINMON Trial.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2025
    Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Hepatitis C virus in childhood and pregnancy.Infectious diseases & immunity · 2025
    Review
  11. Observational
  12. Article
  13. Article
  14. Human Riboviruses: A Comprehensive Study.Journal of molecular evolution · 2025
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Frontiers in microbiology · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Charlotte HedskogGilead Sciences Inc, Foster City, California.
Bandita ParhyGilead Sciences Inc, Foster City, California.
Silvia ChangGilead Sciences Inc, Foster City, California.
Stefan ZeuzemJohann Wolfgang Goethe University Hospital, Frankfurt, Germany.
Christophe MorenoCUB Hôpital Erasme, Université Libre de Bruxelles, Brussels, Belgium.
Stephen D ShafranUniversity of Alberta, Edmonton, Canada.
Sergio M BorgiaWilliam Osler Health System, Brampton, Ontario, Canada.
Tarik AsselahINSERM UMR 1149, AP-HP Hôpital Beaujon, Université Paris Diderot and Centre de Recherche sur l'Inflammation, Clichy, France.
Laurent AlricService de Médecine Interne, Toulouse Cedex, France.
Armand AbergelCHU Estaing, Clermont Ferrand, France.
Jyh-Jou ChenChi Mei Hospital, Tainan, Taiwan.
Jane CollierJohn Radcliffe Hospital, Oxford, UK.
Dharmesh KapoorGlobal Hospitals Group, Hyderabad, India.
Robert H HylandGilead Sciences Inc, Foster City, California.
Peter SimmondsNuffield Department of Medicine, University of Oxford, Oxford, UK.
Hongmei MoGilead Sciences Inc, Foster City, California.
Evguenia S SvarovskaiaGilead Sciences Inc, Foster City, California.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHepatitis C virus (HCV) is currently classified into 8 genotypes and 86 subtypes. The objective of this study was to characterize novel HCV subtypes and to investigate the impact of subtypes on treatment outcome.

methodsFull-genome sequencing was performed on HCV plasma samples with <85% sequence homology of NS3, NS5A, and/or NS5B to HCV genotype (GT) 1-8 reference strains.

resultsA total of 14 653 patients with GT1-6 HCV infection were enrolled in clinical studies of sofosbuvir-based regimens. For the majority of the patients, a specific subtype could be assigned based on a close genetic relationship to previously described subtypes. However, for 19 patients, novel subtypes were identified with <85% homology compared with previously described subtypes. These novel subtypes had the following genotypes: 9 in GT2, 5 in GT4, 2 in GT6, and 1 each in GT1, GT3, and GT5. Despite the presence of polymorphisms at resistance-associated substitution positions, 18 of the 19 patients treated with sofosbuvir-containing therapy achieved SVR12.

conclusionsNineteen novel HCV subtypes were identified, suggesting an even greater genetic diversity of HCV subtypes than previously recognized.

Indexed as

direct-acting antivirals (DAAs)phylogenetic analysisresistance-associated substitutions (RAS)sofosbuvirvelpatasvirvoxilaprevir

Identifiers

PMID30949527
PMCPMC6440686

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.