Evidence map›Paper›PMID 30949525›Full record

ArticleOpen forum infectious diseases2019

High Prevalence of Viral Infections Among Hospitalized Pneumonia Patients in Equatorial Sarawak, Malaysia.

Teck-Hock Toh, King-Ching Hii, Jane K Fieldhouse, Jakie Ting, Antoinette Berita, Tham Thi Nguyen, See-Chang Wong, Toh-Mee Wong, Wei-Honn Lim, Siaw-Jing Ha and 6 more

Abstract read
In one paragraph

Article in Open forum infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Detection of respiratory viruses in adults with suspected COVID-19 in Kuala Lumpur, Malaysia.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Community-acquired viral respiratory infections amongst hospitalized inpatients during a COVID-19 outbreak in Singapore: co-infection and clinical outcomes.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2020
    Article
  20. A RT-PCR assay for the detection of coronaviruses from four genera.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Teck-Hock TohClinical Research Center, Sibu Hospital, Ministry of Health Malaysia, Sarawak.
King-Ching HiiDepartment of Paediatrics, Kapit Hospital, Ministry of Health Malaysia, Sarawak, Malaysia.
Jane K FieldhouseDuke Global Health Institute, Duke University, Durham, North Carolina.ORCID 0000-0002-5450-0970
Jakie TingClinical Research Center, Sibu Hospital, Ministry of Health Malaysia, Sarawak.
Antoinette BeritaDepartment of Paediatrics, Kapit Hospital, Ministry of Health Malaysia, Sarawak, Malaysia.
Tham Thi NguyenEmerging Infectious Disease Program, Duke-NUS Medical School, Singapore.
See-Chang WongDepartment of Paediatrics, Sibu Hospital, Ministry of Health Malaysia, Sarawak.
Toh-Mee WongClinical Research Center, Sibu Hospital, Ministry of Health Malaysia, Sarawak.
Wei-Honn LimClinical Research Center, Sibu Hospital, Ministry of Health Malaysia, Sarawak.
Siaw-Jing HaDepartment of Paediatrics, Sibu Hospital, Ministry of Health Malaysia, Sarawak.
Chuet-Zou LauDepartment of Paediatrics, Sibu Hospital, Ministry of Health Malaysia, Sarawak.
Sing-Ling KongDepartment of Paediatrics, Kapit Hospital, Ministry of Health Malaysia, Sarawak, Malaysia.
Emily S BaileyDuke Global Health Institute, Duke University, Durham, North Carolina.
Tyler E WarkentienNaval Medical Research Center-Asia, Singapore.
Tupur S HusainNaval Medical Research Center-Asia, Singapore.
Gregory C GrayDuke Global Health Institute, Duke University, Durham, North Carolina.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlthough pneumonia is a known cause of morbidity and mortality in Sarawak, Malaysia, the etiology and epidemiology of pneumonia are not well described in this equatorial region. Routine clinical diagnostics for pneumonia etiology at government hospitals in Sarawak had historically involved only bacterial diagnostics. Viral diagnostics were only obtained through outside consultations.

methodsFrom June 15, 2017 to May 14, 2018, we collected nasopharyngeal swabs from 600 patients of all ages older than 1 month hospitalized with pneumonia at Sibu and Kapit Hospitals. Specimens were examined at our collaborating institutions with a panel of molecular assays for viral pathogens including influenza A (IAV), IBV, ICV, and IDV, human adenovirus (AdV), human enterovirus (EV), human coronavirus (CoV), respiratory syncytial virus subtype A (RSV-A) or RSV-B, and parainfluenza virus (PIV) types 1-4.

resultsOf 599 samples examined, 288 (48%) had molecular evidence of 1 or more respiratory viruses. Overall, the most prevalent virus detected was RSV-A (14.2%) followed by AdV (10.4%) and IAV (10.4%), then RSV-B (6.2%), EV (4.2%), IBV (2.2%), PIV-3 (1.7%), CoV (1.0%), PIV-1 (1.0%), PIV-4 (0.7%), and PIV-2 (0.2%). No specimens were confirmed positive for ICV or IDV.

conclusionsThe high prevalence of viruses detected in this study suggest that respiratory viruses may be responsible for considerable morbidity in equatorial regions such as Sarawak. Access to viral diagnostics are very necessary for medical staff to determine appropriate pneumonia treatments.

Indexed as

adenovirusesinfluenzapneumoniarespiratory syncytial virusrespiratory viruses

Identifiers

PMID30949525
PMCPMC6440682

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.