Evidence map›Paper›PMID 30948856›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

A high-resolution X chromosome copy-number variation map in fertile females and women with primary ovarian insufficiency.

Svetlana A Yatsenko, Michelle Wood-Trageser, Tianjiao Chu, Huaiyang Jiang, Aleksandar Rajkovic

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 2 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 2 syntheses or guidelines pooled it, 26 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Article
  7. Primary Amenorrhea and Premature Ovarian Insufficiency.Endocrinology and metabolism clinics of North America · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genetics of human female infertility†.Biology of reproduction · 2019
    Review
  14. X Inactivation and Escape: Epigenetic and Structural Features.Frontiers in cell and developmental biology · 2019
    Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Svetlana A YatsenkoDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA. yatsenkosa@mail.magee.edu.ORCID http://orcid.org/0000-0003-4809-8601
Michelle Wood-TrageserDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA.
Tianjiao ChuMagee-Womens Research Institute, Pittsburgh, PA, USA.
Huaiyang JiangMagee-Womens Research Institute, Pittsburgh, PA, USA.
Aleksandar RajkovicDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA, USA. Aleks.Rajkovic@ucsf.edu.
University of Pittsburgh · USMagee-Womens Research Institute · US

Funding

Genomic Basis of Premature Ovarian InsufficiencyR01HD070647 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2012 to 2016
$2.6M
Genomic integrity of the X chromosome & Ovary-Specific Autosomal Genes R21HD074278 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2014 to 2015
$441k
NICHD NIH HHS R01 HD070647NICHD NIH HHS R21 HD074278
6 · The paper itself

Abstract

purposeSex-biased expression of genes on the X chromosome is accomplished by a complex mechanism of dosage regulation that leads to anatomical and physiological differences between males and females. Copy-number variations (CNVs) may impact the human genome by either affecting gene dosage or disturbing a chromosome structural and/or functional integrity.

methodsWe performed a high-resolution CNV profiling to investigate the X chromosome integrity in cohorts of 269 fertile females and 111 women affected with primary ovarian insufficiency (POI) and assessed CNVs impact into functional and nonfunctional genomic elements.

resultsIn POI patients, we observed a 2.5-fold enrichment for rare CNVs comprising ovary-expressed genes, and genes implicated in autoimmune response and apoptotic signaling. Moreover, there was a higher prevalence of deletions encompassing genes that escape X inactivation, noncoding RNAs, and intergenic DNA sequences among POI females, highlighting structural differences between X chromosomes of fertile and POI females. Furthermore, we discovered a ~4% carrier incidence for X-linked disorders among fertile women.

conclusionWe constructed a high-resolution map of female-specific CNVs that provides critical insights into the spectrum of human genetic variation, sex-specific disease risk factors, and reproductive potential. We discovered novel CNVs associated with ovarian dysfunction and support polygenic models for POI.

Indexed as

AdultChromosome MappingChromosomes, Human, XComparative Genomic HybridizationDNA Copy Number VariationsFemaleGene DosageGenome, HumanGenomicsHumansOvaryPrimary Ovarian Insufficiencyfertilityhigh-resolution copy-number mapprimary ovarian insufficiencyX chromosomeX-linked disease

Identifiers

PMID30948856
OpenAlexW2926669446

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.