Evidence map›Paper›PMID 30948714›Full record

ArticleNature communications2019

Classification of the human phox homology (PX) domains based on their phosphoinositide binding specificities.

Mintu Chandra, Yanni K-Y Chin, Caroline Mas, J Ryan Feathers, Blessy Paul, Sanchari Datta, Kai-En Chen, Xinying Jia, Zhe Yang, Suzanne J Norwood and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 144 citations in OpenAlex.

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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 3 countries.

Mintu ChandraInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia.
Yanni K-Y ChinInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia.
Caroline MasInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia.
J Ryan FeathersDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Blessy PaulInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia.
Sanchari DattaDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Kai-En ChenInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia.ORCID http://orcid.org/0000-0003-1106-1629
Xinying JiaCentre for Advanced Imaging and School of Chemistry and Molecular Biology, The University of Queensland, St. Lucia, QLD, 4072, Australia.ORCID http://orcid.org/0000-0003-0133-8321
Zhe YangSchool of Biomedical Sciences, Faculty of Medicine, The University of Queensland, St. Lucia, QLD, 4072, Australia.
Suzanne J NorwoodInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia.
Biswaranjan MohantyMedicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, 3052, VIC, Australia.
Andrea BugarcicInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia.
Rohan D TeasdaleInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia.
W Mike HenneDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Mehdi MobliCentre for Advanced Imaging and School of Chemistry and Molecular Biology, The University of Queensland, St. Lucia, QLD, 4072, Australia.ORCID http://orcid.org/0000-0003-2420-4262
Brett M CollinsInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, QLD, 4072, Australia. b.collins@imb.uq.edu.au.
The University of Queensland · AUThe University of Texas Southwestern Medical Center · USMonash University · AU

Funding

Spatial determinants in lipid metabolic organization at the sub-organelle levelR35GM119768 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Mike Henne · 2016 to 2026
$4.1M
NIGMS NIH HHS R35 GM119768
6 · The paper itself

Abstract

Phox homology (PX) domains are membrane interacting domains that bind to phosphatidylinositol phospholipids or phosphoinositides, markers of organelle identity in the endocytic system. Although many PX domains bind the canonical endosome-enriched lipid PtdIns3P, others interact with alternative phosphoinositides, and a precise understanding of how these specificities arise has remained elusive. Here we systematically screen all human PX domains for their phospholipid preferences using liposome binding assays, biolayer interferometry and isothermal titration calorimetry. These analyses define four distinct classes of human PX domains that either bind specifically to PtdIns3P, non-specifically to various di- and tri-phosphorylated phosphoinositides, bind both PtdIns3P and other phosphoinositides, or associate with none of the lipids tested. A comprehensive evaluation of PX domain structures reveals two distinct binding sites that explain these specificities, providing a basis for defining and predicting the functional membrane interactions of the entire PX domain protein family.

Indexed as

Binding SitesCalorimetryHumansInterferometryModels, MolecularPhosphatidylinositolsProtein DomainsSequence Analysis, ProteinSorting NexinsPhosphatidylinositolsSNX25 protein, humanSorting Nexins

Identifiers

PMID30948714
PMCPMC6449406
OpenAlexW2933277191

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.