Evidence map›Paper›PMID 30947260›Full record

ArticlePloS one2019

Defining characteristics of genital health in South African adolescent girls and young women at high risk for HIV infection.

Smritee Dabee, Shaun L Barnabas, Katie S Lennard, Shameem Z Jaumdally, Hoyam Gamieldien, Christina Balle, Anna-Ursula Happel, Brandon D Murugan, Anna-Lise Williamson, Nonhlanhla Mkhize and 9 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. The Effect of Exogenous Sex Steroids on the Vaginal Microbiota: A Systematic Review.Frontiers in cellular and infection microbiology · 2021
    Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. Trial
  6. Trial
  7. Genital inflammatory status and the innate immune response to contraceptive initiation.American journal of reproductive immunology (New York, N.Y. : 1989) · 2022
    Trial
  8. Trial
  9. Trial
  10. Trial
  11. Trial
  12. The HIV Reservoir and Immune Landscape Across the Life Course of Women: Implications for Cure Strategies.American journal of reproductive immunology (New York, N.Y. : 1989) · 2026
    Review
  13. Article
  14. Article
  15. Article
  16. Bacterial vaginosis.Nature reviews. Disease primers · 2025
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 5 countries.

Smritee DabeeInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Shaun L BarnabasInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Katie S LennardInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Shameem Z JaumdallyInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Hoyam GamieldienInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Christina BalleInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Anna-Ursula HappelInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Brandon D MuruganInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Anna-Lise WilliamsonInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Nonhlanhla MkhizeCentre for HIV and STIs, National Institute for Communicable Disease (NICD), National Health Laboratory Service, Johannesburg, South Africa.
Janan DietrichPerinatal HIV Research Unit (PHRU), Faculty of Health Sciences, University of the Witwatersrand, Diepkloof, Johannesburg, South Africa.
David A LewisWestern Sydney Sexual Health Centre, Western Sydney Local Health District, Parramatta, Australia.
Francesca ChiodiKarolinska Institute, Stockholm, Sweden.
Thomas J HopeNorthwestern University, Chicago, IL, United States of America.
Robin ShattockImperial College London, London, United Kingdom.
Glenda GrayPerinatal HIV Research Unit (PHRU), Faculty of Health Sciences, University of the Witwatersrand, Diepkloof, Johannesburg, South Africa.
Linda-Gail BekkerInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Heather B JaspanInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
Jo-Ann S PassmoreInstitute of Infectious Disease and Molecular Medicine (IDM), University of Cape Town, Cape Town, South Africa.
University of Cape Town · ZACentre for the AIDS Programme of Research in South Africa · ZANational Health Laboratory Service · ZAPerinatal HIV Research Unit · ZADesmond Tutu HIV Foundation · ZAImperial College London · GBKarolinska Institutet · SENorthwestern University · USSydney Local Health District · AUUniversity of Washington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genital tract of African women has been shown to differ from what is currently accepted as 'normal', defined by a pH≤4.5 and lactobacilli-dominated microbiota. Adolescent girls and young women (AGYW) from sub-Saharan Africa are at high risk for HIV, and we hypothesized that specific biological factors are likely to be influential. This study aimed to compare characteristics of vaginal health in HIV-negative AGYW (16-22-years-old), from two South African communities, to international norms. We measured plasma hormones, vaginal pH, presence of BV (Nugent scoring), sexually transmitted infections (multiplex PCR for Chlamydia trachomatis, Neisseria gonorrhoea, Trichomonas vaginalis, Mycoplasma genitalium) and candidiasis (Gram stain) in AGYW (n = 298) from Cape Town and Soweto. Cervicovaginal microbiota was determined by 16S pyrosequencing; 44 genital cytokines were measured by Luminex; and cervical T-cell activation/proliferation (CCR5, HLA-DR, CD38, Ki67) was measured by multiparametric flow cytometry. 90/298 (30.2%) AGYW were negative for BV, candidiasis and bacterial STIs. L. crispatus and L. iners were the dominant bacteria in cervicovaginal swabs, and the median vaginal pH was 4.7. AGYW with L. crispatus-dominant microbiota (42.4%) generally had the lowest cytokine concentrations compared to women with more diverse microbiota (34/44 significantly upregulated cytokines). Frequencies of CCR5+CD4+ T-cells co-expressing CD38 and HLA-DR correlated positively with interleukin (IL)-6, TNF-α, GRO-α, macrophage inflammatory protein (MIP)-1α, and IL-9. While endogenous oestrogen had an immune-dampening effect on IL-6, TNF-related apoptosis-inducing ligand (TRAIL) and IL-16, injectable hormone contraceptives (DMPA and Net-EN) were associated with significantly lower endogenous hormone concentrations (p<0.0001 for oestrogen and progesterone) and upregulation of 34/44 cytokines. Since genital inflammation and the presence of activated CD4+ T cells in the genital tract have been implicated in increased HIV risk in South African women, the observed high levels of genital cellular activation and cytokines from AGYW may point towards biological factors increasing HIV risk in this region.

Indexed as

AdolescentCD4-Positive T-LymphocytesCervix UteriCohort StudiesCytokinesEstrogensFemaleHIV InfectionsHumansHydrogen-Ion ConcentrationLactobacillus crispatusMicrobiotaProgesteroneRisk FactorsSouth AfricaVaginaCytokinesEstrogensProgesterone

Identifiers

PMID30947260
PMCPMC6448899
OpenAlexW2929854681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.