Evidence map›Paper›PMID 30947255›Full record

ArticlePLoS biology2019

A novel evolutionary conserved mechanism of RNA stability regulates synexpression of primordial germ cell-specific genes prior to the sex-determination stage in medaka.

Amaury Herpin, Cornelia Schmidt, Susanne Kneitz, Clara Gobé, Martina Regensburger, Aurélie Le Cam, Jérome Montfort, Mateus C Adolfi, Christina Lillesaar, Dagmar Wilhelm and 9 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Sex Lethal Gene Manipulates Gonadal Development of Medaka,International journal of molecular sciences · 2022
    Article
  2. Germline stem cells in human.Signal transduction and targeted therapy · 2022
    Review
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 5 countries.

Amaury HerpinINRA, UR1037 Fish Physiology and Genomics, Rennes, France.ORCID 0000-0002-0630-4027
Cornelia SchmidtUniversity of Wuerzburg, Physiological Chemistry, Biocenter, Wuerzburg, Germany.
Susanne KneitzUniversity of Wuerzburg, Physiological Chemistry, Biocenter, Wuerzburg, Germany.
Clara GobéUMR BDR, INRA, ENVA, Université Paris Saclay, Jouy en Josas, France.ORCID 0000-0001-5242-7426
Martina RegensburgerUniversity of Wuerzburg, Physiological Chemistry, Biocenter, Wuerzburg, Germany.
Aurélie Le CamINRA, UR1037 Fish Physiology and Genomics, Rennes, France.
Jérome MontfortINRA, UR1037 Fish Physiology and Genomics, Rennes, France.
Mateus C AdolfiUniversity of Wuerzburg, Physiological Chemistry, Biocenter, Wuerzburg, Germany.
Christina LillesaarUniversity of Wuerzburg, Physiological Chemistry, Biocenter, Wuerzburg, Germany.
Dagmar WilhelmUniversity of Melbourne, Department of Anatomy & Neuroscience, Parkville, Victoria, Australia.
Michael KraeusslingUniversity of Wuerzburg, Physiological Chemistry, Biocenter, Wuerzburg, Germany.
Brigitte MourotINRA, UR1037 Fish Physiology and Genomics, Rennes, France.ORCID 0000-0002-1475-2786
Béatrice PorconINRA, UR1037 Fish Physiology and Genomics, Rennes, France.
Maëlle PannetierUMR BDR, INRA, ENVA, Université Paris Saclay, Jouy en Josas, France.ORCID 0000-0002-5826-619X
Eric PailhouxUMR BDR, INRA, ENVA, Université Paris Saclay, Jouy en Josas, France.
Laurence EttwillerUniversity of Heidelberg, Centre for Organismal Studies (COS), Department of Developmental Biology, Heidelberg, Germany.ORCID 0000-0002-3957-6539
Dirk DolleUniversity of Heidelberg, Centre for Organismal Studies (COS), Department of Developmental Biology, Heidelberg, Germany.
Yann GuiguenINRA, UR1037 Fish Physiology and Genomics, Rennes, France.ORCID 0000-0001-5464-6219
Manfred SchartlUniversity of Wuerzburg, Physiological Chemistry, Biocenter, Wuerzburg, Germany.
University of Würzburg · DELaboratoire de Physiologie et Génomique des Poissons · FRÉcole Nationale Vétérinaire d'Alfort · FRSteno Diabetes Centers · DKThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dmrt1 is a highly conserved transcription factor, which is critically involved in regulation of gonad development of vertebrates. In medaka, a duplicate of dmrt1-acting as master sex-determining gene-has a tightly timely and spatially controlled gonadal expression pattern. In addition to transcriptional regulation, a sequence motif in the 3' UTR (D3U-box) mediates transcript stability of dmrt1 mRNAs from medaka and other vertebrates. We show here that in medaka, two RNA-binding proteins with antagonizing properties target this D3U-box, promoting either RNA stabilization in germ cells or degradation in the soma. The D3U-box is also conserved in other germ-cell transcripts, making them responsive to the same RNA binding proteins. The evolutionary conservation of the D3U-box motif within dmrt1 genes of metazoans-together with preserved expression patterns of the targeting RNA binding proteins in subsets of germ cells-suggest that this new mechanism for controlling RNA stability is not restricted to fishes but might also apply to other vertebrates.

Indexed as

3' Untranslated RegionsAnimalsBiological EvolutionFemaleFish ProteinsGene Expression Regulation, DevelopmentalGerm CellsMaleOryziasRNA, MessengerRNA Recognition Motif ProteinsRNA StabilitySex Determination ProcessesTranscription FactorsVertebrates3' Untranslated RegionsDMRT1 proteinFish ProteinsRNA, MessengerRNA Recognition Motif ProteinsTranscription Factors

Identifiers

PMID30947255
PMCPMC6448818
OpenAlexW2926365151

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.