Evidence map›Paper›PMID 30946161›Full record

ArticleAIDS (London, England)2019

Low rates of nucleoside reverse transcriptase inhibitor and nonnucleoside reverse transcriptase inhibitor drug resistance in Botswana.

Sikhulile Moyo, Simani Gaseitsiwe, Melissa Zahralban-Steele, Dorcas Maruapula, Tapiwa Nkhisang, Baitshepi Mokaleng, Terence Mohammed, Tsotlhe R Ditlhako, Ontlametse T Bareng, Thatayaone P Mokgethi and 11 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in AIDS (London, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01965470 (Botswana Combination Prevention Project), which is not on this map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01965470 phase4completednot on this map

Botswana Combination Prevention Project: -Evaluation Protocol (Protocol #1): Research Design and Impact Evaluation -Closed Clinical Cohort Protocol (Protocol #3) Implementation, Monitoring and Evaluation of Combination HIV Prevention Interventions in Rural and Peri-Urban Communities in Botswana

TypeinterventionalSponsorCenters for Disease Control and PreventionRan2013 to 2018ConditionsHIVArmsCombination Prevention, Enhanced Care
3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 2 countries.

Sikhulile MoyoBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Simani GaseitsiweBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Melissa Zahralban-SteeleDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, USA.
Dorcas MaruapulaBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Tapiwa NkhisangDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, USA.
Baitshepi MokalengBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Terence MohammedBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Tsotlhe R DitlhakoBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Ontlametse T BarengBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Thatayaone P MokgethiBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Erik van WidenfeltBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Molly Pretorius-HolmeDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, USA.
Madisa O MineMinistry of Health and Wellness, Gaborone, Botswana.
Elliot RaizesU.S. Centers for Disease Control and Prevention, Atlanta.
Etienne Kadima YankindaBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Kathleen E WirthBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Tendani GaolatheBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Joseph M MakhemaBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Shahin LockmanBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Max EssexBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Vlad NovitskyBotswana Harvard AIDS Institute Partnership, Gaborone, Botswana.
Botswana Harvard AIDS Institute Partnership · BWHarvard University · USGTx (United States) · USMinistry of Health · BW

Funding

Partnership for Global Health Research Training Program (Renewal)-Supplement for OBSSR, NCI, NCI-AIDS and NIDCDD43TW010543 · FIC · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Wafaie W Fawzi, DAVIDSON HOWES HAMER · 2017 to 2026
$12.1M
Training in HIV Genomics, Treatment, and Cure Research in BotswanaD43TW009610 · FIC · THE BOTSWANA HARVARD HEALTH PARTNERSHIP · PI SHAHIN LOCKMAN, Joseph Moeketsi Makhema · 2013 to 2026
$4.4M
Mentoring in Patient-Oriented HIV Research in the Era of Universal ARTK24AI131928 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAHIN LOCKMAN · 2017 to 2026
$1.9M
CGH CDC HHS U01 GH000447CGH CDC HHS U2G GH001911FIC NIH HHS D43 TW009610FIC NIH HHS D43 TW010543NIAID NIH HHS K24 AI131928PEPFARWellcome Trus 107752/Z/15/Z
6 · The paper itself

Abstract

backgroundScale-up of antiretroviral therapy (ART) and introduction of treat-all strategy necessitates population-level monitoring of acquired HIV drug resistance (ADR) and pretreatment drug resistance (PDR) mutations.

methodsBlood samples were collected from 4973 HIV-positive individuals residing in 30 communities across Botswana who participated in the Botswana Combination Prevention Project (BCPP) in 2013-2018. HIV sequences were obtained by long-range HIV genotyping. Major drug-resistance mutations (DRMs) and surveillance drug resistance mutations (SDRMs) associated with nucleoside reverse transcriptase inhibitors (NRTI) and nonnucleoside reverse transcriptase inhibitors (NNRTI) were analyzed according to the Stanford University HIV Drug Resistance Database. Viral sequences were screened for G-to-A hypermutations. A threshold of 2% was used for hypermutation adjustment. Viral suppression was considered at HIV-1 RNA load ≤400 copies/ml.

resultsAmong 4973 participants with HIV-1C sequences, ART data were available for 4927 (99%) including 3858 (78%) on ART. Among those on ART, 3435 had viral load data and 3297 (96%) were virologically suppressed. Among 1069 (22%) HIV-infected individuals not on ART, we found NRTI-associated and NNRTI-associated SDRMs were found in 1.5% (95% confidence interval [CI] 1.0-2.5%) and 2.9% (95% CI 2.0-4.2%), respectively. Of the 138 (4%) of individuals who had detectable HIV-1 RNA, we found NRTI-associated and NNRTI-associated drug resistance mutations in 16% (95% CI 10-25%) and 33% (95% CI 25-42%), respectively.

conclusionWe found a low prevalence of NRTI-associated and NNRTI-associated PDR-resistance mutations among residents of rural and peri-urban communities across Botswana. However, individuals on ART with detectable virus had ADR NRTI and NNRTI mutations above 15%.

Indexed as

Drug Resistance, ViralMutationAdolescentAdultAnti-HIV AgentsBotswanaFemaleGene FrequencyGenotypeGenotyping TechniquesHIV-1HIV InfectionsHIV Reverse TranscriptaseHumansMaleMiddle AgedAnti-HIV AgentsHIV Reverse TranscriptaseNucleosidesreverse transcriptase, Human immunodeficiency virus 1Reverse Transcriptase Inhibitors

Identifiers

PMID30946161
PMCPMC6467559
OpenAlexW2916132975

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.