Evidence map›Paper›PMID 30945415›Full record

ArticleMolecular ecology resources2019

A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes.

Alain Vignal, Simon Boitard, Noémie Thébault, Guiguigbaza-Kossigan Dayo, Valentine Yapi-Gnaore, Issaka Youssao Abdou Karim, Cécile Berthouly-Salazar, Nóra Pálinkás-Bodzsár, Daniel Guémené, Francoise Thibaud-Nissen and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular ecology resources, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  11. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. HGFDB: a collective database of helmeted guinea fowl genomics.Database : the journal of biological databases and curation · 2021
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 4 countries.

Alain VignalGenPhySE, INRA, INPT, INP-ENVT, Université de Toulouse, Castanet Tolosan, France.ORCID https://orcid.org/0000-0002-6797-2125
Simon BoitardGenPhySE, INRA, INPT, INP-ENVT, Université de Toulouse, Castanet Tolosan, France.
Noémie ThébaultGenPhySE, INRA, INPT, INP-ENVT, Université de Toulouse, Castanet Tolosan, France.
Guiguigbaza-Kossigan DayoCIRDES, Bobo-Dioulasso, Burkina-Faso.
Valentine Yapi-GnaoreCIRDES, Bobo-Dioulasso, Burkina-Faso.ORCID https://orcid.org/0000-0001-7144-6593
Issaka Youssao Abdou KarimEcole Polytechnique d'Abomey-Calavi, Université d'Abomey-Calavi, Cotonou, Bénin.ORCID https://orcid.org/0000-0001-9591-1664
Cécile Berthouly-SalazarUMR DIADE, IRD, Montpellier, France.ORCID https://orcid.org/0000-0002-0685-6745
Nóra Pálinkás-BodzsárResearch Centre for Farm Animal Gene Conservation, Gödöllö, Hungary.
Daniel GuémenéCentre INRA Val de Loire, SYSAAF, Nouzilly, France.
Francoise Thibaud-NissenNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland.ORCID https://orcid.org/0000-0003-4957-7807
Wesley C WarrenMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, Missouri.ORCID https://orcid.org/0000-0003-2255-2730
Michèle Tixier-BoichardGABI, INRA, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France.ORCID https://orcid.org/0000-0001-5944-7884
Xavier RognonGABI, INRA, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France.ORCID https://orcid.org/0000-0003-3087-6794
École Nationale Vétérinaire de Toulouse · FRAgroParisTech · FRCentre international de recherche-développement sur l'elevage en zone subhumide · BFÉcole Polytechnique · FRJames S. McDonnell Foundation · USNational Institutes of Health · USSyndicat des Sélectionneurs Avicoles et Aquacoles Français · FRUniversité de Montpellier · FR

Funding

National Biomedical Information ServicesZIHLM200888 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PALTOO, DINA · 2009 to 2025
$5200.7M
AGENAVIAgroParisTechEremitage Fund for Scientific Research Partnership Price CSRS 2013INRA Département de Génétique AnimaleIntramural NIH HHS Z99 LM999999
6 · The paper itself

Abstract

The helmeted guinea fowl Numida meleagris belongs to the order Galliformes. Its natural range includes a large part of sub-Saharan Africa, from Senegal to Eritrea and from Chad to South Africa. Archaeozoological and artistic evidence suggest domestication of this species may have occurred about 2,000 years BP in Mali and Sudan primarily as a food resource, although villagers also benefit from its capacity to give loud alarm calls in case of danger, of its ability to consume parasites such as ticks and to hunt snakes, thus suggesting its domestication may have resulted from a commensal association process. Today, it is still farmed in Africa, mainly as a traditional village poultry, and is also bred more intensively in other countries, mainly France and Italy. The lack of available molecular genetic markers has limited the genetic studies conducted to date on guinea fowl. We present here a first-generation whole-genome sequence draft assembly used as a reference for a study by a Pool-seq approach of wild and domestic populations from Europe and Africa. We show that the domestic populations share a higher genetic similarity between each other than they do to wild populations living in the same geographical area. Several genomic regions showing selection signatures putatively related to domestication or importation to Europe were detected, containing candidate genes, most notably EDNRB2, possibly explaining losses in plumage coloration phenotypes in domesticated populations.

Indexed as

DomesticationEvolution, MolecularGenomeSelection, GeneticAfricaAnimalsComputational BiologyEuropeGalliformesSequence Analysis, DNAWhole Genome Sequencingdomesticationgenetic selectiongenomehelmeted guinea fowl

Identifiers

PMID30945415
PMCPMC6579635
OpenAlexW2926020105

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.