Evidence map›Paper›PMID 30944353›Full record

ArticleScientific reports2019

G-quadruplex dynamics contribute to regulation of mitochondrial gene expression.

M Falabella, J E Kolesar, C Wallace, D de Jesus, L Sun, Y V Taguchi, C Wang, T Wang, I M Xiang, J K Alder and 9 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 106 citations in OpenAlex.

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  18. G-quadruplex propensity inNAR genomics and bioinformatics · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

M FalabellaVascular Medicine Institute, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
J E KolesarDepartment of Animal Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
C WallaceCenter for Biological Imaging, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
D de JesusVascular Medicine Institute, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
L SunVascular Medicine Institute, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
Y V TaguchiDepartment of Animal Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
C WangDepartment of Animal Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
T WangDepartment of Pediatrics, University of Pittsburgh, Pittsburgh, PA, 15224, USA.
I M XiangDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA, 19081, USA.
J K AlderDepartment of Medicine, Division of Pulmonary, Allergy and Critical Care Medicine, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
R MaheshanDivision of Clinical and Metabolic Genetics, The Hospital for Sick Children and the University of Toronto, Toronto, ON, M5G 1X8, Canada.
W HorneRichard K. Mellon Institute for Pediatric Research, Children's Hospital of Pittsburgh of UPMC, Pittsburgh, PA, 15224, USA.
J Turek-HermanDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA, 19081, USA.
P J PaganoVascular Medicine Institute, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
C M St CroixCenter for Biological Imaging, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
N SondheimerDivision of Clinical and Metabolic Genetics, The Hospital for Sick Children and the University of Toronto, Toronto, ON, M5G 1X8, Canada.
L A YatsunykDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA, 19081, USA.ORCID http://orcid.org/0000-0003-3946-0939
F B JohnsonDepartment of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, 19104, USA.ORCID http://orcid.org/0000-0002-7443-7227
B A KaufmanVascular Medicine Institute, University of Pittsburgh, Pittsburgh, PA, 15261, USA. bkauf@pitt.edu.ORCID http://orcid.org/0000-0003-4767-4937
University of Pittsburgh · USUniversity of Pennsylvania · USSwarthmore College · USUniversity of Toronto · CAChildren's Hospital of Pittsburgh · US

Funding

Mechanisms of Telomere-Mediated Lung DiseaseR01HL135062 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Jonathan K. Alder · 2018 to 2026
$4.1M
Reactive Oxygen Species in Vascular DiseaseR01HL079207 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PAGANO, PATRICK J · 2007 to 2018
$3.4M
Progressive degenerative role of Nox and thrombospondin-1 in the aging vasculatureR01HL142248 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PAGANO, PATRICK J · 2019 to 2022
$2.3M
Molecular mechanisms of mitochondrial DNA deletion formationR01GM110424 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAUFMAN, BRETT A · 2015 to 2019
$1.9M
Mechanisms of Teleomere-Mediated EmphysemaR00HL113105 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ALDER, JONATHAN K. · 2014 to 2016
$743k
NHLBI NIH HHS R00 HL113105NHLBI NIH HHS R01 HL079207NHLBI NIH HHS R01 HL135062NHLBI NIH HHS R01 HL142248NIGMS NIH HHS R01 GM110424
6 · The paper itself

Abstract

Single-stranded DNA or RNA sequences rich in guanine (G) can adopt non-canonical structures known as G-quadruplexes (G4). Mitochondrial DNA (mtDNA) sequences that are predicted to form G4 are enriched on the heavy-strand and have been associated with formation of deletion breakpoints. Increasing evidence supports the ability of mtDNA to form G4 in cancer cells; however, the functional roles of G4 structures in regulating mitochondrial nucleic acid homeostasis in non-cancerous cells remain unclear. Here, we demonstrate by live cell imaging that the G4-ligand RHPS4 localizes primarily to mitochondria at low doses. We find that low doses of RHPS4 do not induce a nuclear DNA damage response but do cause an acute inhibition of mitochondrial transcript elongation, leading to respiratory complex depletion. We also observe that RHPS4 interferes with mtDNA levels or synthesis both in cells and isolated mitochondria. Importantly, a mtDNA variant that increases G4 stability and anti-parallel G4-forming character shows a stronger respiratory defect in response to RHPS4, supporting the conclusion that mitochondrial sensitivity to RHPS4 is G4-mediated. Taken together, our results indicate a direct role for G4 perturbation in mitochondrial genome replication, transcription processivity, and respiratory function in normal cells.

Indexed as

AnimalsCell Line, TumorCells, CulturedDNA, MitochondrialDNA ReplicationGene ExpressionGenes, MitochondrialGenome, MitochondrialG-QuadruplexesGuanineHeLa CellsHumansMiceMice, Inbred BALB CMitochondriaSequence DeletionDNA, MitochondrialGuanine

Identifiers

PMID30944353
PMCPMC6447596
OpenAlexW2932423581

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.