Evidence map›Paper›PMID 30944318›Full record

ArticleNature communications2019

Structures of the wild-type MexAB-OprM tripartite pump reveal its complex formation and drug efflux mechanism.

Kenta Tsutsumi, Ryo Yonehara, Etsuko Ishizaka-Ikeda, Naoyuki Miyazaki, Shintaro Maeda, Kenji Iwasaki, Atsushi Nakagawa, Eiki Yamashita

Open access · greenAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 67 citations in OpenAlex.

  1. High resolution cryo-EM structure of theJournal of structural biology: X · 2026
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kenta TsutsumiInstitute for Protein Research, Osaka University, Suita, 565-0871, Osaka, Japan.ORCID http://orcid.org/0000-0002-1168-6656
Ryo YoneharaInstitute for Protein Research, Osaka University, Suita, 565-0871, Osaka, Japan.
Etsuko Ishizaka-IkedaInstitute for Protein Research, Osaka University, Suita, 565-0871, Osaka, Japan.
Naoyuki MiyazakiInstitute for Protein Research, Osaka University, Suita, 565-0871, Osaka, Japan.ORCID http://orcid.org/0000-0002-4880-7300
Shintaro MaedaInstitute for Protein Research, Osaka University, Suita, 565-0871, Osaka, Japan.
Kenji IwasakiInstitute for Protein Research, Osaka University, Suita, 565-0871, Osaka, Japan.
Atsushi NakagawaInstitute for Protein Research, Osaka University, Suita, 565-0871, Osaka, Japan.ORCID http://orcid.org/0000-0002-1700-7861
Eiki YamashitaInstitute for Protein Research, Osaka University, Suita, 565-0871, Osaka, Japan. eiki@protein.osaka-u.ac.jp.ORCID http://orcid.org/0000-0002-4278-0039
Protein Research Foundation · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Pseudomonas aeruginosa, MexAB-OprM plays a central role in multidrug resistance by ejecting various drug compounds, which is one of the causes of serious nosocomial infections. Although the structures of the components of MexAB-OprM have been solved individually by X-ray crystallography, no structural information for fully assembled pumps from P. aeruginosa were previously available. In this study, we present the structure of wild-type MexAB-OprM in the presence or absence of drugs at near-atomic resolution. The structure reveals that OprM does not interact with MexB directly, and that it opens its periplasmic gate by forming a complex. Furthermore, we confirm the residues essential for complex formation and observed a movement of the drug entrance gate. Based on these results, we propose mechanisms for complex formation and drug efflux.

Indexed as

Anti-Bacterial AgentsBacterial Outer Membrane ProteinsCrystallography, X-RayDrug Resistance, Multiple, BacterialMembrane Transport ProteinsModels, MolecularProtein ConformationProtein Interaction Domains and MotifsProtein SubunitsPseudomonas aeruginosaStructure-Activity RelationshipAnti-Bacterial AgentsBacterial Outer Membrane ProteinsMembrane Transport ProteinsMexA protein, Pseudomonas aeruginosaMexB protein, Pseudomonas aeruginosaOprM protein, Pseudomonas aeruginosaProtein Subunits

Identifiers

PMID30944318
PMCPMC6447562
OpenAlexW2929053425

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.