Evidence map›Paper›PMID 30943892›Full record

ArticleBMC genomics2019

De novo transcriptome and phytochemical analyses reveal differentially expressed genes and characteristic secondary metabolites in the original oolong tea (Camellia sinensis) cultivar 'Tieguanyin' compared with cultivar 'Benshan'.

Yuqiong Guo, Chen Zhu, Shanshan Zhao, Shuting Zhang, Wenjian Wang, Haifeng Fu, Xiaozhen Li, Chengzhe Zhou, Lan Chen, Yuling Lin and 1 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
6.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 58 citations in OpenAlex.

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  18. Analysis of WRKY Resistance Gene Family inFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Yuqiong GuoCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Chen ZhuCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Shanshan ZhaoCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Shuting ZhangCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Wenjian WangAnxi Tea Research Institute, Anxi, 362400, China.
Haifeng FuCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Xiaozhen LiCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Chengzhe ZhouCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Lan ChenCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Yuling LinCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Zhongxiong LaiCollege of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. laizx01@163.com.
Fujian Agriculture and Forestry University · CNTea Research Institute · CN

Funding

Construction of Plateau Discipline of Fujian Province 102/71201801101Earmarked Fund for China Agriculture Research System CARS-19Major Science and Technology Project in Fujian Province 2015NZ0002-1Natural Science Foundation of Fujian Province 2018J01701Rural Revitalization Tea Industry Technical Service Project of Fujian Agriculture and Forestry University 11899170102Special Fund Project for Scientific and Technological Innovation of Fujian Agriculture and Forestry University CXZX2017164Special Fund Project for Scientific and Technological Innovation of Fujian Agriculture and Forestry University CXZX2018069
6 · The paper itself

Abstract

backgroundThe two original plants of the oolong tea cultivar ('Tieguanyin') are "Wei shuo" 'Tieguanyin'-TGY (Wei) and "Wang shuo" 'Tieguanyin'-TGY (Wang). Another cultivar, 'Benshan' (BS), is similar to TGY in its aroma, taste, and genetic make-up, but it lacks the "Yin Rhyme" flavor. We aimed to identify differences in biochemical characteristics and gene expression among these tea plants.

resultsThe results of spectrophotometric, high performance liquid chromatography (HPLC), and gas chromatography-mass spectrometry (GC-MS) analyses revealed that TGY (Wei) and TGY (Wang) had deeper purple-colored leaves and higher contents of anthocyanin, catechins, caffeine, and limonene compared with BS. Analyses of transcriptome data revealed 12,420 differentially expressed genes (DEGs) among the cultivars. According to a Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, the flavonoid, caffeine, and limonene metabolic pathways were highly enriched. The transcript levels of the genes involved in these three metabolic pathways were not significantly different between TGY (Wei) and TGY (Wang), except for two unigenes encoding IMPDH and SAMS, which are involved in caffeine metabolism. The comparison of TGY vs. BS revealed eight up-regulated genes (PAL, C4H, CHS, F3'H, F3H, DFR, ANS, and ANR) and two down-regulated genes (FLS and CCR) in flavonoid metabolism, four up-regulated genes (AMPD, IMPDH, SAMS, and 5'-Nase) and one down-regulated XDH gene in caffeine metabolism; and two down-regulated genes (ALDH and HIBADH) in limonene degradation. In addition, the expression levels of the transcription factor (TF) PAP1 were significantly higher in TGY than in BS. Therefore, high accumulation of flavonoids, caffeine, and limonene metabolites and the expression patterns of their related genes in TGY might be beneficial for the formation of the "Yin Rhyme" flavor.

conclusionsTranscriptomic, HPLC, and GC-MS analyses of TGY (Wei), TGY (Wang), and BS indicated that the expression levels of genes related to secondary metabolism and high contents of catechins, anthocyanin, caffeine, and limonene may contribute to the formation of the "Yin Rhyme" flavor in TGY. These findings provide new insights into the relationship between the accumulation of secondary metabolites and sensory quality, and the molecular mechanisms underlying the formation of the unique flavor "Yin Rhyme" in TGY.

Indexed as

Gene Expression Regulation, PlantTranscriptomeCamellia sinensisFlavonoidsMetabolic Networks and PathwaysMetabolomePhylogenyPhytochemicalsPlant LeavesPlant ProteinsFlavonoidsPhytochemicalsPlant ProteinsCamellia sinensisPhytochemicalSecondary metabolitesTranscriptome

Identifiers

PMID30943892
PMCPMC6446291
OpenAlexW2928389246

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.