ArticleGigaScience2019
Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping.
Article in GigaScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers, 1 of them a synthesis that pooled it.
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Who cites it
66 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Plant sex chromosomes defy evolutionary models of expanding recombination suppression and genetic degeneration.Nature plants · 2021Pooled it
- High-Contiguity Haplotype-Resolved Genome Assembly of the Hexaploid Actinidia valvata Rootstock Sheds Light on Waterlogging Resistance Gene.Plant biotechnology journal · 2026Article
- Chromosome-level haplotype-resolved genome assembly of kiwifruit (Actinidia eriantha).Scientific data · 2026Article
- Kiwifruit genomics and applications: recent advances, current challenges, and future prospects.Horticulture research · 2026Article
- Allelic structural variation at the NLR25-1 locus enhances defense against Pseudomonas syringae in kiwifruit.Genome biology · 2026Article
- Chromosome-level genome assembly and annotation of the endangered plant Primula kwangtungensis (Primulaceae).Scientific data · 2026Article
- CRISPR/Cas9-mediated editing of carotenoid biosynthesis genes alters carotenoid concentrations in kiwifruit.BMC plant biology · 2025Article
- Subgenome Dominance in Allotetraploid Actinidia valvata Regulates RNA mAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- Natural variation of AcEGY3 mediates chloroplastic ROS homeostasis to confer kiwifruit thermotolerance.Nature communications · 2025Article
- Construction of the super pan-genome for the genusHorticulture research · 2025Article
- Recruitment of Sugar Transport and Scent Volatile Genes for Prey Attraction in the Nectar Spoon of Heliamphora tatei.Evolution & development · 2025Article
- Chromosome-level genome assembly assisting for dissecting mechanism of anthocyanin regulation in kiwifruit (Actinidia arguta).Molecular horticulture · 2025Article
- Genome-Wide Identification and Expression Divergence ofLife (Basel, Switzerland) · 2025Article
- Decoding the Hayward kiwi (Frontiers in plant science · 2025Article
- Unveiling kiwifruit TCP genes: evolution, functions, and expression insights.Plant signaling & behavior · 2024Article
- Genome-wide identification of NDR1/HIN1-like genes in kiwifruit and function analysis of AeNHL17 in response to disease resistance.BMC plant biology · 2024Article
- Genomes of diverse Actinidia species provide insights into cis-regulatory motifs and genes associated with critical traits.BMC biology · 2024Article
- The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental plants.Horticulture research · 2024Article
- Graph-Based Pangenome of Actinidia chinensis Reveals Structural Variations Mediating Fruit Degreening.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024Article
- Genome assembly of autotetraploid Actinidia arguta highlights adaptive evolution and enables dissection of important economic traits.Plant communications · 2024Article
6 more citing papers are in PubMed but not listed here.
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15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundKiwifruit (Actinidia spp.) is a dioecious plant with fruits containing abundant vitamin C and minerals. A handful of kiwifruit species have been domesticated, among which Actinidiaeriantha is increasingly favored in breeding owing to its superior commercial traits. Recently, elite cultivars from A. eriantha have been successfully selected and further studies on their biology and breeding potential require genomic information, which is currently unavailable.
findingsWe assembled a chromosome-scale genome sequence of A. eriantha cultivar White using single-molecular sequencing and chromatin interaction map-based scaffolding. The assembly has a total size of 690.6 megabases and an N50 of 21.7 megabases. Approximately 99% of the assembly were in 29 pseudomolecules corresponding to the 29 kiwifruit chromosomes. Forty-three percent of the A. eriantha genome are repetitive sequences, and the non-repetitive part encodes 42,988 protein-coding genes, of which 39,075 have homologues from other plant species or protein domains. The divergence time between A. eriantha and its close relative Actinidia chinensis is estimated to be 3.3 million years, and after diversification, 1,727 and 1,506 gene families are expanded and contracted in A. eriantha, respectively.
conclusionsWe provide a high-quality reference genome for kiwifruit A. eriantha. This chromosome-scale genome assembly is substantially better than 2 published kiwifruit assemblies from A. chinensis in terms of genome contiguity and completeness. The availability of the A. eriantha genome provides a valuable resource for facilitating kiwifruit breeding and studies of kiwifruit biology.
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