Evidence map›Paper›PMID 30942444›Full record

ArticleMolecular medicine reports2019

Production of an aberrant splice variant of CCL5 is not caused by genetic mutation in the mammary glands of mastitis‑infected Holstein cows.

Ling Yang, Ruiqing Guo, Zhihua Ju, Xiuge Wang, Qiang Jiang, Yong Liu, Han Zhao, Kaili He, Jianbin Li, Jinming Huang

Open access · hybridAbstract read
In one paragraph

Article in Molecular medicine reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ling YangCollege of Life Sciences and Food Engineering, Hebei University of Engineering, Handan, Hebei 056021, P.R. China.
Ruiqing GuoCollege of Life Sciences and Food Engineering, Hebei University of Engineering, Handan, Hebei 056021, P.R. China.
Zhihua JuDairy Cattle Research Center, Shandong Academy of Agricultural Sciences, Jinan, Shandong 250100, P.R. China.
Xiuge WangDairy Cattle Research Center, Shandong Academy of Agricultural Sciences, Jinan, Shandong 250100, P.R. China.
Qiang JiangDairy Cattle Research Center, Shandong Academy of Agricultural Sciences, Jinan, Shandong 250100, P.R. China.
Yong LiuCollege of Life Sciences and Food Engineering, Hebei University of Engineering, Handan, Hebei 056021, P.R. China.
Han ZhaoDairy Cattle Research Center, Shandong Academy of Agricultural Sciences, Jinan, Shandong 250100, P.R. China.
Kaili HeCollege of Life Sciences and Food Engineering, Hebei University of Engineering, Handan, Hebei 056021, P.R. China.
Jianbin LiDairy Cattle Research Center, Shandong Academy of Agricultural Sciences, Jinan, Shandong 250100, P.R. China.
Jinming HuangDairy Cattle Research Center, Shandong Academy of Agricultural Sciences, Jinan, Shandong 250100, P.R. China.
Shandong Academy of Agricultural Sciences · CNHebei University of Engineering · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic mutations, including single nucleotide polymorphisms (SNPs), result in aberrant alternatively splicing of gene and involves in susceptibility of inflammatory diseases, including bovine mastitis. C‑C motif chemokine ligand 5 (CCL5) is an immune‑associated gene, but its alternative splicing (AS) mechanism of gene expression has not yet been understood. The present study identified the splice variant of CCL5 and the compared differential expression of various transcripts between healthy and mastitic mammary gland tissue from cows. A novel transcript lacking exon 2 with a deletion of 112 bp (referred to as CCL5‑AS) was identified in the mammary gland. The expression of CCL5‑AS was lower compared with CCL5‑reference in the healthy and mastitic mammary tissues. A total of two novel SNPs (g.1647 C>T and g.1804 G>A) were identified in exon 2 of CCL5. Using the splicing mini‑gene reporter assay in bovine mammary epithelial cells (MAC‑T) and 293T cells, it was confirmed that the production of CCL5‑AS was not caused by the two SNPs. The present findings suggested that alternative splicing is one of the mechanisms of CCL5 expression regulation and is involved in mastitis infection, but that genetic mutation was not responsible for the generation of the abnormal transcript of CCL5 in cows.

Indexed as

Alternative SplicingGenetic Predisposition to DiseaseMutationAnimalsCase-Control StudiesCattleChemokine CCL5Computational BiologyDatabases, GeneticFemaleGene Expression ProfilingGenetic Association StudiesMastitis, BovinePolymorphism, Single NucleotideTranscriptomeChemokine CCL5

Identifiers

PMID30942444
PMCPMC6472127
OpenAlexW2928029133

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.