Evidence map›Paper›PMID 30941803›Full record

ReviewAmerican journal of primatology2019

Primate microbiomes over time: Longitudinal answers to standing questions in microbiome research.

Johannes R Björk, Mauna Dasari, Laura Grieneisen, Elizabeth A Archie

Abstract readReview
In one paragraph

Review in American journal of primatology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

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  15. Gut microbial community in proboscis monkeys (Royal Society open science · 2024
    Article
  16. Aging, Race, and Health Disparities: Recommendations From the Research Centers Collaborative Network.The journals of gerontology. Series B, Psychological sciences and social sciences · 2024
    Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Johannes R BjörkDepartment of Biological Sciences, University of Notre Dame, Notre Dame, Indiana.
Mauna DasariDepartment of Biological Sciences, University of Notre Dame, Notre Dame, Indiana.
Laura GrieneisenDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, Minnesota.
Elizabeth A ArchieDepartment of Biological Sciences, University of Notre Dame, Notre Dame, Indiana.

Funding

A life course perspective on gut microbiome aging and health in a non-human primate modelR01AG071684 · NIA · UNIVERSITY OF NOTRE DAME · PI ARCHIE, ELIZABETH · 2021 to 2025
$3.2M
A life course perspective on the effects of cumulative early adversity on healthR01AG053330 · NIA · UNIVERSITY OF NOTRE DAME · PI Elizabeth Archie · 2017 to 2026
$3.0M
A prospective, longitudinal perspective on gut microbiome aging and health in a non-human primate modelR21AG055777 · NIA · UNIVERSITY OF NOTRE DAME · PI ARCHIE, ELIZABETH · 2017 to 2018
$438k
NIA NIH HHS R01 AG053330NIA NIH HHS R01 AG071684NIA NIH HHS R21 AG055777
6 · The paper itself

Abstract

To date, most insights into the processes shaping vertebrate gut microbiomes have emerged from studies with cross-sectional designs. While this approach has been valuable, emerging time series analyses on vertebrate gut microbiomes show that gut microbial composition can change rapidly from 1 day to the next, with consequences for host physical functioning, health, and fitness. Hence, the next frontier of microbiome research will require longitudinal perspectives. Here we argue that primatologists, with their traditional focus on tracking the lives of individual animals and familiarity with longitudinal fecal sampling, are well positioned to conduct research at the forefront of gut microbiome dynamics. We begin by reviewing some of the most important ecological processes governing microbiome change over time, and briefly summarizing statistical challenges and approaches to microbiome time series analysis. We then introduce five questions of general interest to microbiome science where we think field-based primate studies are especially well positioned to fill major gaps: (a) Do early life events shape gut microbiome composition in adulthood? (b) Do shifting social landscapes cause gut microbial change? (c) Are gut microbiome phenotypes heritable across variable environments? (d) Does the gut microbiome show signs of host aging? And (e) do gut microbiome composition and dynamics predict host health and fitness? For all of these questions, we highlight areas where primatologists are uniquely positioned to make substantial contributions. We review preliminary evidence, discuss possible study designs, and suggest future directions.

Indexed as

Gastrointestinal MicrobiomeAnimalsEcosystemFecesHost Microbial InteractionsLongitudinal StudiesPrimatesSocial Environmentcommunity dynamicsfitnesshealthlongitudinalmicrobial ecologytime series

Identifiers

PMID30941803
PMCPMC7193701

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.