Evidence map›Paper›PMID 30940649›Full record

ArticleThe Journal of biological chemistry2019

Myxoma virus M013 protein antagonizes NF-κB and inflammasome pathways via distinct structural motifs.

Rekha R Garg, Cody B Jackson, Masmudur M Rahman, Amir R Khan, Alfred S Lewin, Grant McFadden

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Rekha R GargDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32611.
Cody B JacksonDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32611.
Masmudur M RahmanDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32611; Center for Immunotherapy, Vaccines, and Virotherapy, Biodesign Institute, Arizona State University, Tempe, Arizona 85281.
Amir R KhanSchool of Biochemistry and Immunology, Trinity Biomedical Sciences Institute, Trinity College Dublin, Dublin 2, Ireland. Electronic address: Amir.Khan@tcd.ie.
Alfred S LewinDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32611. Electronic address: lewin@ufl.edu.
Grant McFaddenDepartment of Molecular Genetics and Microbiology, University of Florida, Gainesville, Florida 32611; Center for Immunotherapy, Vaccines, and Virotherapy, Biodesign Institute, Arizona State University, Tempe, Arizona 85281. Electronic address: grantmcf@asu.edu.
University of Florida · USTrinity College Dublin · IE

Funding

Testing Gene Therapy in Models of Geographic AtrophyR01EY026268 · NEI · UNIVERSITY OF FLORIDA · PI LEWIN, ALFRED S · 2016 to 2020
$2.6M
Manipulation of inflammasomes and NF-kB signaling in human myeloid cells by MyxomR01AI100987 · NIAID · UNIVERSITY OF FLORIDA · PI MCFADDEN, GRANT · 2013 to 2017
$1.9M
NEI NIH HHS R01 EY026268NIAID NIH HHS R01 AI100987
6 · The paper itself

Abstract

Among the repertoire of immunoregulatory proteins encoded by myxoma virus, M013 is a viral homologue of the viral pyrin domain-only protein (vPOP) family. In myeloid cells, M013 protein has been shown to inhibit both the inflammasome and NF-κB signaling pathways by direct binding to ASC1 and NF-κB1, respectively. In this study, a three-dimensional homology model of the M013 pyrin domain (PYD) was built based on similarities to known PYD structures. A distinctive feature of the deduced surface electrostatic map of the M013 PYD is the presence of a negatively region consisting of numerous aspartate and glutamate residues in close proximity. Single-site mutations of aspartate and glutamate residues reveal their role in interactions with ASC-1. The biological significance of charge complementarity in the M013-ASC-1 interaction was further confirmed by functional assays of caspase-1 activation and subsequent secretion of cytokines. M013 also has a unique 33-residue C-terminal tail that follows the N-terminal PYD, and it is enriched in positively charged residues. Deletion of the tail of M013 significantly inhibited the interactions between M013 and NF-κB1, thus compromising the ability of the viral protein to suppress the secretion of pro-inflammatory cytokines. These results demonstrate that vPOP M013 exploits distinct structural motifs to regulate both the inflammasome and NF-κB pathways.

Indexed as

Myxoma virusViral ProteinsAmino Acid MotifsAmino Acid SubstitutionCaspase 1HeLa CellsHumansInflammasomesMutagenesis, Site-DirectedMutation, MissenseNF-kappa BProtein DomainsSignal TransductionTHP-1 CellsCaspase 1InflammasomesNF-kappa BViral ProteinsASC-1host-pathogen interactionimmune evasioninflammasomeinnate immunitymyxoma virusNF-kappa B (NF-KB)poxvirusPYRIN domain

Identifiers

PMID30940649
PMCPMC6544859
OpenAlexW2932069706

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.