Evidence map›Paper›PMID 30940554›Full record

ArticleGene expression patterns : GEP2019

Identification of regulatory elements recapitulating early expression of L-plastin in the zebrafish enveloping layer and embryonic periderm.

Emily A Baumgartner, Zachary J Compton, Spencer Evans, Jacek Topczewski, Elizabeth E LeClair

Open access · greenAbstract read
In one paragraph

Article in Gene expression patterns : GEP, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Homology-Directed Repair in Zebrafish: Witchcraft and Wizardry?Frontiers in molecular biosciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Emily A BaumgartnerDepartment of Biological Sciences, DePaul University, USA.
Zachary J ComptonDepartment of Biological Sciences, DePaul University, USA.
Spencer EvansStanley Manne Children's Research Institute, Ann & Robert H. Lurie Children's Hospital of Chicago, USA.
Jacek TopczewskiStanley Manne Children's Research Institute, Ann & Robert H. Lurie Children's Hospital of Chicago, USA; Department of Pediatrics, Northwestern University Feinberg School of Medicine, USA; Department of Biochemistry and Molecular Biology, Medical University of Lublin, Poland.
Elizabeth E LeClairDepartment of Biological Sciences, DePaul University, USA. Electronic address: eleclair@depaul.edu.
DePaul University · USLurie Children's Hospital · USNorthwestern University · US

Funding

TRD - VisualizationP41GM103545 · NIGMS · UNIVERSITY OF UTAH · PI JOHNSON, CHRISTOPHER R., MACLEOD, ROB S. · 2012 to 2019
$9.7M
Fluorender: An Imaging Tool for Visualization and Analysis of Confocal Data as ApR01GM098151 · NIGMS · UNIVERSITY OF UTAH · PI HANSEN, CHARLES · 2011 to 2014
$1.2M
Follow That Cell: Motility Analysis of L-Plastin Mutant ZebrafishR15GM120664 · NIGMS · DE PAUL UNIVERSITY · PI LECLAIR, ELIZABETH E · 2016 to 2020
$598k
NIGMS NIH HHS P41 GM103545NIGMS NIH HHS R01 GM098151NIGMS NIH HHS R15 GM120664
6 · The paper itself

Abstract

We have cloned and characterized an intronic fragment of zebrafish lymphocyte cytosolic protein 1 (lcp1, also called L-plastin) that drives expression to the zebrafish enveloping layer (EVL). L-plastin is a calcium-dependent actin-bundling protein belonging to the plastin/fimbrin family of proteins, and is necessary for the proper migration and attachment of several adult cell types, including leukocytes and osteoclasts. However, in zebrafish lcp1 is abundantly expressed much earlier, during differentiation of the EVL. The cells of this epithelial layer migrate collectively, spreading vegetally over the yolk. L-plastin expression persists into the larval periderm, a transient epithelial tissue that forms the first larval skin. This finding establishes that L-plastin is activated in two different embryonic waves, with a distinct regulatory switch between the early EVL and the later leukocyte. To better study L-plastin expressing cells we attempted CRISPR/Cas9 homology-driven recombination (HDR) to insert a self-cleaving peptide (Cre-P2A-EGFP-CAAX) downstream of the native lcp1 promoter. This produced a stable zebrafish line expressing Cre recombinase in EVL nuclei and green fluorescence in EVL cell membranes. In vivo tracking of these labeled cells provided enhanced views of EVL migration behavior, membrane extensions, and mitotic events. Finally, we experimentally dissected key elements of the targeted lcp1 locus, discovering a ∼300 bp intronic sequence sufficient to drive EVL expression. The lcp1: Cre-P2A-EGFP-CAAX zebrafish should be useful for studying enveloping layer specification, gastrulation movements and periderm development in this widely used vertebrate model. In addition, the conserved regulatory sequences we have isolated predict that L-plastin orthologs may have a similar early expression pattern in other vertebrate embryos.

Indexed as

AnimalsAnimals, Genetically ModifiedCell DifferentiationEmbryo, NonmammalianEpitheliumGastrulationGene Expression Regulation, DevelopmentalHumansMembrane GlycoproteinsMicrofilament ProteinsRegulatory Sequences, Nucleic AcidTranscriptomeZebrafishZebrafish ProteinsLCP1 protein, humanMembrane GlycoproteinsMicrofilament ProteinsplastinZebrafish ProteinsActinCre recombinaseCytoskeletonEnhancerEpibolyEpidermisEpitheliumFilopodiaGastrulationLamellipodiaMicroridgesPeridermPromoter

Identifiers

PMID30940554
PMCPMC6655599
OpenAlexW2934532894

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.