Evidence map›Paper›PMID 30940539›Full record

ArticleDevelopmental biology2019

Trim33 is required for appropriate development of pre-cardiogenic mesoderm.

Sudha Rajderkar, Jeffrey M Mann, Christopher Panaretos, Kenji Yumoto, Hong-Dong Li, Yuji Mishina, Benjamin Ralston, Vesa Kaartinen

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Three-dimensional chromatin organization in cardiac development and disease.Journal of molecular and cellular cardiology · 2021
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sudha RajderkarDepartment of Biologic and Materials Sciences, University of Michigan, Ann Arbor, MI, 48109, USA.
Jeffrey M MannDepartment of Biologic and Materials Sciences, University of Michigan, Ann Arbor, MI, 48109, USA.
Christopher PanaretosDepartment of Biologic and Materials Sciences, University of Michigan, Ann Arbor, MI, 48109, USA.
Kenji YumotoDepartment of Biologic and Materials Sciences, University of Michigan, Ann Arbor, MI, 48109, USA.
Hong-Dong LiCenter for Bioinformatics, School of Information Science and Engineering, Central South University, Changsha, Hunan, 410083, PR China.
Yuji MishinaDepartment of Biologic and Materials Sciences, University of Michigan, Ann Arbor, MI, 48109, USA.
Benjamin RalstonDepartment of Biologic and Materials Sciences, University of Michigan, Ann Arbor, MI, 48109, USA.
Vesa KaartinenDepartment of Biologic and Materials Sciences, University of Michigan, Ann Arbor, MI, 48109, USA. Electronic address: vesak@umich.edu.
University of Michigan · USCentral South University · CN

Funding

THE ROLE OF TGF-BETA3 IN PALATOGENESISR01DE013085 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KAARTINEN, VESA M · 2001 to 2014
$5.4M
Activin Receptor-Like Kinase-2 in Cardiac MorphogenesisR01HL074862 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KAARTINEN, VESA M · 2004 to 2011
$2.6M
NHLBI NIH HHS R01 HL074862NIDCR NIH HHS R01 DE013085
6 · The paper itself

Abstract

Congenital cardiac malformations are among the most common birth defects in humans. Here we show that Trim33, a member of the Tif1 subfamily of tripartite domain containing transcriptional cofactors, is required for appropriate differentiation of the pre-cardiogenic mesoderm during a narrow time window in late gastrulation. While mesoderm-specific Trim33 mutants did not display noticeable phenotypes, epiblast-specific Trim33 mutant embryos developed ventricular septal defects, showed sparse trabeculation and abnormally thin compact myocardium, and died as a result of cardiac failure during late gestation. Differentiating embryoid bodies deficient in Trim33 showed an enrichment of gene sets associated with cardiac differentiation and contractility, while the total number of cardiac precursor cells was reduced. Concordantly, cardiac progenitor cell proliferation was reduced in Trim33-deficient embryos. ChIP-Seq performed using antibodies against Trim33 in differentiating embryoid bodies revealed more than 4000 peaks, which were significantly enriched close to genes implicated in stem cell maintenance and mesoderm development. Nearly half of the Trim33 peaks overlapped with binding sites of the Ctcf insulator protein. Our results suggest that Trim33 is required for appropriate differentiation of precardiogenic mesoderm during late gastrulation and that it will likely mediate some of its functions via multi-protein complexes, many of which include the chromatin architectural and insulator protein Ctcf.

Indexed as

GastrulationAnimalsEmbryoid BodiesEmbryo, MammalianMesodermMiceMice, TransgenicMyocardiumStem CellsTranscription FactorsTranscription FactorsTrim33 protein, mouse

Identifiers

PMID30940539
PMCPMC6547372
OpenAlexW2925845334

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.