Evidence map›Paper›PMID 30940169›Full record

ArticleVirology journal2019

Noncovalent SUMO-interaction motifs in HIV integrase play important roles in SUMOylation, cofactor binding, and virus replication.

Yingfeng Zheng, Kallesh Danappa Jayappa, Zhujun Ao, Xiangguo Qiu, Ruey-Chyi Su, Xiaojian Yao

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Review
  6. Article
  7. Complex Relationships between HIV-1 Integrase and Its Cellular Partners.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Review
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yingfeng ZhengLaboratory of Molecular Human Retrovirology, University of Manitoba, Winnipeg, MB, Canada.
Kallesh Danappa JayappaLaboratory of Molecular Human Retrovirology, University of Manitoba, Winnipeg, MB, Canada.
Zhujun AoLaboratory of Molecular Human Retrovirology, University of Manitoba, Winnipeg, MB, Canada.
Xiangguo QiuDepartment of Medical Microbiology, Faculty of Medicine, University of Manitoba, Winnipeg, MB, Canada.
Ruey-Chyi SuDepartment of Medical Microbiology, Faculty of Medicine, University of Manitoba, Winnipeg, MB, Canada.
Xiaojian YaoLaboratory of Molecular Human Retrovirology, University of Manitoba, Winnipeg, MB, Canada. xiao-jian.yao@umanitoba.ca.
University of Manitoba · CA

Funding

Canadian Institute of Health Research (CIHR) HIV/AIDS Bridge Funding Biomed/Clinic stream (HBF-131553)CIHR/MHRC RPP grant (RPA-132176)
6 · The paper itself

Abstract

backgroundHIV integrase (IN) and its cellular cofactors, including lens-epithelium-derived growth factor (LEDGF/p75), Ku70, p300, and Rad52, are subject to small ubiquitin-like modifier (SUMO) modification. In addition to covalent SUMOylation, SUMO paralogs can also noncovalently bind proteins through SUMO-interacting motifs (SIMs). However, little is known about whether HIV IN contains SIMs and the roles of these motifs.

resultsWe searched for the amino acid sequence of HIV IN and investigated three putative SIMs of IN: SIM1 72VILV75, SIM2 200IVDI203 and SIM3 257IKVV260. Our mutational analysis showed that 200IVDI203 and 257IKVV260 are two bona fide SIMs that mediate IN-SUMO noncovalent interactions. Additionally, a cell-based SUMOylation assay revealed that IN SIMs negatively regulate the SUMOylation of IN, as well as the interaction between IN and SUMO E2 conjugation enzyme Ubc9. Conversely, IN SIMs are required for its interactions with LEDGF/p75 but not with Ku70. Furthermore, our study reveals that SIM2 and SIM3 are required for the nuclear localization of IN. Finally, we investigated the impact of IN SIM2 and SIM3 on HIV single cycle replication in CD4

conclusionOur data suggested that the IN

Indexed as

SumoylationVirus ReplicationAmino Acid MotifsHEK293 CellsHIV-1HIV IntegraseHumansProtein BindingProtein Interaction Domains and MotifsReal-Time Polymerase Chain ReactionSUMO-1 ProteinHIV IntegraseSUMO-1 ProteinHIV replicationHuman immunodeficiency virus (HIV)Integrase (IN)LEDGF/p75Nuclear localizationProtein-protein interactionSUMO-interacting motifs (SIMs)SUMOylation

Identifiers

PMID30940169
PMCPMC6446281
OpenAlexW2939791458

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.