Evidence map›Paper›PMID 30940097›Full record

ArticleBMC genomics2019

Rapid evolution of a retro-transposable hotspot of ovine genome underlies the alteration of BMP2 expression and development of fat tails.

Zhangyuan Pan, Shengdi Li, Qiuyue Liu, Zhen Wang, Zhengkui Zhou, Ran Di, Xuejiao An, Benpeng Miao, Xiangyu Wang, Wenping Hu and 6 more

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. The Influence of theAnimals : an open access journal from MDPI · 2026
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  13. A Functional Variant Alters the Binding ofAnimals : an open access journal from MDPI · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Zhangyuan PanInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Shengdi LiKey Lab of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
Qiuyue LiuInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Zhen WangKey Lab of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
Zhengkui ZhouInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Ran DiInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Xuejiao AnInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Benpeng MiaoKey Lab of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
Xiangyu WangInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Wenping HuInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Xiaofei GuoInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Shenjin LvCollege of Agriculture and Forestry Science, Linyi University, Linyi, China.
Fukuan LiCollege of Agriculture and Forestry Science, Linyi University, Linyi, China.
Guohui DingKey Lab of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China.
Mingxing ChuInstitute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China. mxchu@263.net.
Yixue LiKey Lab of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China. yxli@sibs.ac.cn.

Funding

Agricultural Science and Technology Innovation Program of China ASTIP-IAS13Doctor Foundation of Linyi University LYDX2016BS068Earmarked Fund for China Agriculture Research System CARS-38National Basic Research Program of China 2011CB910204, 2011CB510102National Key Scientific Instrument and Equipment Development Project 2012YQ03026108National Key Technology Support Program 2013BAI101B09National Natural Science Foundation of China 31802031National Natural Science Foundation of China (CN) 31772580Natural Science Foundation of Shandong Province ZR2018BC045Youth Innovation Promotion Association CAS 2017325
6 · The paper itself

Abstract

backgroundSheep have developed the ability to store fat in their tails, which is a unique way of reserving energy to survive a harsh environment. However, the mechanism underlying this adaptive trait remains largely unsolved.

resultsIn the present study, we provide evidence for the genetic determinants of fat tails, based on whole genome sequences of 89 individual sheep. A genome-wide scan of selective sweep identified several candidate loci including a region at chromosome 13, a haplotype of which underwent rapid evolution and spread through fat-tailed populations in China and the Middle East. Sequence analysis revealed an inter-genic origin of this locus, which later became a hotspot of ruminant-specific retro-transposon named BovB. Additionally, the candidate locus was validated based on a fat- and thin-tailed cross population. The expression of an upstream gene BMP2 was differentially regulated between fat-tailed and thin-tailed individuals in tail adipose and several other tissue types.

conclusionsOur findings suggest the fixation of fat tails in domestic sheep is caused by a selective sweep near a retro-transposable hotspot at chromosome 13, the diversity of which specifically affects the expression of BMP2. The present study has shed light onto the understanding of fat metabolism.

Indexed as

GenomeAdipose TissueAnimalsBone Morphogenetic Protein 2DNA Transposable ElementsEvolution, MolecularGenetic Association StudiesGenetic LociHaplotypesPlatelet-Derived Growth FactorPolymorphism, Single NucleotideSheepTailTranscriptomeWhole Genome SequencingBone Morphogenetic Protein 2DNA Transposable ElementsPlatelet-Derived Growth FactorBMP2EvolutionFat tailRetro-transposable hotspotSheep

Identifiers

PMID30940097
PMCPMC6445056

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.